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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcacaaaatgaaaaaaaaaaaagtttctatttttatttgcttcagtcattgtgtagtatgtgaacgtgacctttgttttgttatggttggaactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTCTGCAAACAAATGTGTTCACCGGAG

Basic information

species Glycine max
transcript GLYMA16G04950.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04950.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G06850.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgcacaaaatgaaaaaaaaaaaagtttctatttttatttgctt-cagtcattgtgtagtatgtgaacg-tgacctttgttttgttatggttggaac-tgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTCTGCAAACAAATGTGTTCACCGGAG
                        |||| ||| |   || |  ||   | |  ||   |   || | || | | | |  | |||  |||    |  |   |||| || |||| ||    |||   |||||||| |||||||||||||||||| | || |||||||||||||||||    ||  | || |||||||| ||||| ||||
----------------------gtaagtctctctcactagtcactaataatacttagatcaaatttaaatgattaacaatattt-attacaaataaattgtgtgaagCTATCATCTACCAACAATGAGCATGACGAGATAGACTTTGAGTTCCTTGGAAACAGAACAGGACAACCAGCTATATTACAGACAAATGTATTCACAGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4314110|gb|AI461229.1|AI461229
EST:     ACATAAAGATGGGTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCANAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|192324897|gb|FK015378.1|FK015378
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|24136885|gb|BU927395.1|BU927395
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|19053688|gb|BM732355.1|BM732355
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|14126334|gb|BG790772.1|BG790772
EST:     ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|19269784|gb|BM886040.1|BM886040
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|16346473|gb|BI972077.1|BI972077
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|11412008|gb|BF424019.1|BF424019
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|208182833|gb|GD986935.1|GD986935
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGACGGAG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACG-CGGAG
EST: gi|208314168|gb|GE117760.1|GE117760
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTT
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTT
EST: gi|7691975|gb|AW760091.1|AW760091
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTNTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|208104867|gb|GD903220.1|GD903220
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTACTAT                         TTATCTTCCCCAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|16996918|gb|BM086290.1|BM086290
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|10239027|gb|BE807915.1|BE807915
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|19052636|gb|BM731303.1|BM731303
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|12773290|gb|BG238217.1|BG238217
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|207710962|gb|GD693480.1|GD693480
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|15813096|gb|BI785371.1|BI785371
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|6566722|gb|AW234354.1|AW234354
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|192327271|gb|FK019548.1|FK019548
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|6726859|gb|AW311278.1|AW311278
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|16996796|gb|BM086178.1|BM086178
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|208326536|gb|GE120246.1|GE120246
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|17022538|gb|BM093572.1|BM093572
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|208079997|gb|GD874183.1|GD874183
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|15337235|gb|BI497891.1|BI497891
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|14258870|gb|BG881778.1|BG881778
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATACACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|21678471|gb|BQ630822.1|BQ630822
EST:     ACATAAATATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|5770394|gb|AI973568.1|AI973568
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|208069825|gb|GD870460.1|GD870460
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|18732892|gb|BM527308.1|BM527308
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|9258985|gb|BE347132.1|BE347132
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|9259378|gb|BE347525.1|BE347525
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|16105996|gb|BI893736.1|BI893736
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattgtgtagtatgtgaacgtgacctttgttttgttatggttggaactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTCTGCAAACAAATGTGTTCACCGGAG
                              ttttgttat  TA-rich tract