1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttaaaagagagaaacagagtcagtaactcttatggatttttttaatattttttttattgtaaagaaaaactgcatatttatatggtaacggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG
species | Glycine max |
transcript | GLYMA16G04770.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGEST: gi|9902312|gb|BE611280.1|BE611280
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGEST: gi|151404717|gb|EV274531.1|EV274531
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: TGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGEST: gi|7326536|gb|AW620334.1|AW620334
genomic: TGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGEST: gi|4293036|gb|AI441990.1|AI441990
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: GTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGEST: gi|23732353|gb|BU764336.1|BU764336
genomic: GTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGEST: gi|151409575|gb|EV279383.1|EV279383
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGEST: gi|5508917|gb|AI855475.1|AI855475
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGEST: gi|19934529|gb|BQ079559.1|BQ079559
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
EST: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGA GCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
genomic: AAGCTGCTGTTCCTCAGGAGTTTCACCCCAGGACGCCAGTTAAACTTGGAgtgcgtattc ... ggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTG
atattttttttattgtaaagaaaaactgcatatttatatggtaacggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG
tggtaac putative branch site (score: 2)
ttttttattgtaaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaaaagagagaaacagagtcagtaactcttatggatttttttaatattttttttattgtaaagaaaaactgcatatttatatggtaacggcaatgcagGCAACTGCAGGTTTAAGGCAATTGGAAGGGGATGCTTCTGATAGGATATTGCAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG