1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtatgaaaagtgtcactaacattcctagttatatttacacattcatgtcaatctccattctcttcacttcttacagtcttcattaattattgtggtgtagGTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAATCTCTTATCCCACTTTTAGAGGAAGCTGAAAGTGTTGTCCCTGAGGACC
species | Glycine max |
transcript | GLYMA16G04750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAACTTGGATCTCCTTCATATTGGCAACGAACTCNAGTTTTATGATAAG GTAACACCCGGTTTGAGTGCATACACANATAATCCTCAACAAGCTGCAGAAEST: gi|213607163|gb|DB967012.1|DB967012
genomic: AGAACTTGGATCTCCTTCGTATTGGCAACGAACTCGAGTTTTATGATAAGgtcaaaacta ... tgtggtgtagGTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAA
EST: AGAACTTGGATCTCCTTCGTATTGGCAACGAACTCGAGTTTTATGATAAG GTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAAEST: gi|192323530|gb|FK017111.1|FK017111
genomic: AGAACTTGGATCTCCTTCGTATTGGCAACGAACTCGAGTTTTATGATAAGgtcaaaacta ... tgtggtgtagGTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAA
EST: AGAACTTGGATCTCCTTCGTATTGGCAACGAACTCGAGTTTTATGATAAG GTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAAEST: gi|192331687|gb|FK019992.1|FK019992
genomic: AGAACTTGGATCTCCTTCGTATTGGCAACGAACTCGAGTTTTATGATAAGgtcaaaacta ... tgtggtgtagGTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAA
EST: AGAACTTGGATCTCCTTCGTATTGGCAACGAACTCGAGTTTTATGATAAG GTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAAEST: gi|6566238|gb|AW233919.1|AW233919
genomic: AGAACTTGGATCTCCTTCGTATTGGCAACGAACTCGAGTTTTATGATAAGgtcaaaacta ... tgtggtgtagGTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAA
EST: AGAACTTGGATCTCCTTCGTATTGGCAACGAACTCGAGTTTTATGATAAG GTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAA
genomic: AGAACTTGGATCTCCTTCGTATTGGCAACGAACTCGAGTTTTATGATAAGgtcaaaacta ... tgtggtgtagGTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAA
tgtcaatctccattctcttcacttcttacagtcttcattaattattgtggtgtagGTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAATCTCTTATCCCACTTTTAGAGGAAGCTGAAAGTGTTGTCCCTGAGGACC
tcttcattaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaaaagtgtcactaacattcctagttatatttacacattcatgtcaatctccattctcttcacttcttacagtcttcattaattattgtggtgtagGTAACACCCGGTTTGAGTGCATACGCAGATAATCCTCAACAAGCTGCAGAATCTCTTATCCCACTTTTAGAGGAAGCTGAAAGTGTTGTCCCTGAGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - tgtcact
- - - - - - - - - -cattcct
- - - - - - - - - - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcatt