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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaaatacaaatcttcattttcttgatctttaacaacttgtttcatttacattaagaaactcattaatctgctccatcattttttacttgtatattgcagGCTCATGCTGCTTCTGCAGTGCTAAATTTCACTGAGAATTGTACCTCAGATATCCTAACACCTTACTTAGATGGGATTGTGAGCAAACTTTTGGTACTCC

Basic information

species Glycine max
transcript GLYMA16G04400.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04400.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g07240.t01 (Vitis vinifera), 3'ss of exon 2
gtaaatacaaatcttcattttcttgatctttaacaacttgtttca---tttacattaagaaactcattaat--ctgctccatcattttttacttgtatattgcagGCTCATGCTGCTTCTGCAGTGCTAAATTTCACTGAGAATTGTACCTCAGATATCCTAACACCTTACTTAGATGGGATTGTGAGCAAACTTTTGGTACTCC
     ||    | || | ||||||||| | |  ||  ||||   |   |||  ||| |  |  | ||   |  ||      | |||| ||  |||||| |   |||| ||||||||||| ||||| || ||||||| ||| ||||| ||| |||||||| |||| || ||||||||||| ||||||||||||||  | |||||||
---ggtatgt-tgtttagtttcttgatatatc-cattttgtaataaattttctattgatcatttgatgtgttactaaatattaatttattgtttgtatgtcctagGCCCATGCTGCTTCAGCAGTTCTCAATTTCAGTGAAAATTGCACCCCAGATATCTTAACCCCATACTTAGATGGAATTGTGAGCAAACTGCTTGTACTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacattaagaaactcattaatctgctccatcattttttacttgtatattgcagGCTCATGCTGCTTCTGCAGTGCTAAATTTCACTGAGAATTGTACCTCAGATATCCTAACACCTTACTTAGATGGGATTGTGAGCAAACTTTTGGTACTCC
                cattaat  putative branch site (score: 3)
                              atcattttttacttgt  TA-rich tract