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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactccgggactcattaatctattgaaccaaggcatagttgcatacaagctatgtttttttctaaccaatttgcatgtaatatccattattattgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCAATTCGCATCTGCATTGACAATTGAAATCAACCGTGGATTTGCTGCCTTG

Basic information

species Glycine max
transcript GLYMA16G03410.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789319|gb|BG651910.1|BG651910
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCCTTCATCTCCCTGAA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAA
EST: gi|298184383|gb|HO029596.1|HO029596
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|16347651|gb|BI973246.1|BI973246
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|9439799|gb|BE440313.1|BE440313
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|19453060|gb|BM954470.1|BM954470
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|9204464|gb|BE330688.1|BE330688
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGNCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|192331495|gb|FK022742.1|FK022742
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCTTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|151399497|gb|EV269368.1|EV269368
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCCTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|19938446|gb|BQ081723.1|BQ081723
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|12773507|gb|BG238434.1|BG238434
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|151410252|gb|EV280067.1|EV280067
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|19345746|gb|BM890626.1|BM890626
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|22522564|gb|BU081375.1|BU081375
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTCGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|192325969|gb|FK016646.1|FK016646
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|22524798|gb|BU083609.1|BU083609
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTCGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|18040508|gb|BM308802.1|BM308802
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|26047825|gb|CA784486.1|CA784486
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|14991649|gb|BI317322.1|BI317322
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|192294452|gb|FG987381.1|FG987381
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|57575556|gb|CX548531.1|CX548531
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|7458579|gb|AW666029.1|AW666029
EST:     GTGCTTGCAGTTTAGTTCTTGTGGTCCAATGCCCATACCTTTATTCACAC                         TGCACCGCCTTGCATGCCAACCGTTCATCTACCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|23050778|gb|BU577030.1|BU577030
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|151393790|gb|EV263665.1|EV263665
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|192300856|gb|FG991178.1|FG991178
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
EST: gi|57575716|gb|CX548691.1|CX548691
EST:     GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAA                         GGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA
genomic: GTGCTTGCAGTTTTGTTTTTGTGGTCCAATGCCCATACCTTTATTCACAAgtaagactcc ... attgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagctatgtttttttctaaccaatttgcatgtaatatccattattattgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCAATTCGCATCTGCATTGACAATTGAAATCAACCGTGGATTTGCTGCCTTG
             ttctaac  putative branch site (score: 1)
                               taatatccattattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagactccgggactcattaatctattgaaccaaggcatagttgcatacaagctatgtttttttctaaccaatttgcatgtaatatccattattattgtcgcagGGCACCGCCTTGCATCCCAACCGTTCATCTCCCTGAAGAACCAATTCGCCAATTCGCATCTGCATTGACAATTGAAATCAACCGTGGATTTGCTGCCTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC