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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatgcaaactctgcccaatcttctagatttcctttgtagcactcgtagctgcttgcatatattataattaaacaaagctattcttttatggatttgcagAGCTCGGAAGAATTACAGTCGTCGACTCAAGCTTCTCATGAGCCCAAGAGTGAACAACCAAACAATCACACAACTGATGCTCCTGTTACAGACACAGGAT

Basic information

species Glycine max
transcript GLYMA16G02860.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452605|gb|BM954015.1|BM954015
EST:     CTGAAAGACATGCAGTCAGCCTTGTTTCTGCTGAAATGAAGAACTTGCAG                         AGCTCGGAAGAATTACAGTCGTCGACTCAAGCTTCTCATGAGCCCAAGAGT
genomic: CTGAAAGACATGCAGTCAGCCTTGTTTCTGCTGAAATGAAGAACTTGCAGgttctcctat ... ggatttgcagAGCTCGGAAGAATTACAGTCGTCGACTCAAGCTTCTCATGAGCCCAAGAGT
EST: gi|192315705|gb|FK011173.1|FK011173
EST:     CTGAAAGACATGCAGTCAGCCTTGTTTCTGCTGAAATGAAGAACTTGCAG                         AGCTCGGAAGAATTACAGTCGTCGACTCAAGCTTCTCATGAGCCCAAGAGT
genomic: CTGAAAGACATGCAGTCAGCCTTGTTTCTGCTGAAATGAAGAACTTGCAGgttctcctat ... ggatttgcagAGCTCGGAAGAATTACAGTCGTCGACTCAAGCTTCTCATGAGCCCAAGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagctgcttgcatatattataattaaacaaagctattcttttatggatttgcagAGCTCGGAAGAATTACAGTCGTCGACTCAAGCTTCTCATGAGCCCAAGAGTGAACAACCAAACAATCACACAACTGATGCTCCTGTTACAGACACAGGAT
            atatattataattaaa  TA-rich tract