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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagtcgcaatctccctttcacttatgacttgattattagtgcttttggtgctgtgatttctgatatgattatttgtttatttttcacttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACCCTTGTCATCTGTCACAAACCT

Basic information

species Glycine max
transcript GLYMA16G01790.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213603704|gb|DB956269.1|DB956269
EST:     GGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
EST: gi|192296122|gb|FG989482.1|FG989482
EST:     GGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
EST: gi|213603106|gb|DB960411.1|DB960411
EST:     GGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
EST: gi|209708087|gb|BW671103.1|BW671103
EST:     GGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
EST: gi|208299932|gb|GE099711.1|GE099711
EST:     GGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggtgctgtgatttctgatatgattatttgtttatttttcacttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACCCTTGTCATCTGTCACAAACCT
               ttctgat  putative branch site (score: 3)
                             tttgtttatttttcac  putative PPT
             atttctgatatgatta  TA-rich tract