1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtggggtggttcgttcatgccactacttcattcattctagtaaagtttgcatttttatttttcttcgctgtttggttagttttcggggtttttaatgtttcggtgttacccagGTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAAGGCTCTAA
species | Glycine max |
transcript | GLYMA16G01410.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG GTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTTEST: gi|192331743|gb|FK024847.1|FK024847
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtggt ... tgttacccagGTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG GTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTTEST: gi|192330603|gb|FK021936.1|FK021936
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtggt ... tgttacccagGTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG GTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTTEST: gi|192328840|gb|FK022584.1|FK022584
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtggt ... tgttacccagGTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG GTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtggt ... tgttacccagGTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
ttttcttcgctgtttggttagttttcggggtttttaatgtttcggtgttacccagGTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAAGGCTCTAA
ttttaat putative branch site (score: 3)
tttttaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggggtggttcgttcatgccactacttcattcattctagtaaagtttgcatttttatttttcttcgctgtttggttagttttcggggtttttaatgtttcggtgttacccagGTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAAGGCTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG