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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccgtgttttcagggcaaacatttgtgctgctcccattgtatacagttgaactaataaatatgacttgatcagGTTTGCATCTATGAGGAGCATTCCTGCATATGAGAATGCTATGAAAGACTGCTTTGAACGGTGTTTGGATTTGTACTTGTGCCCTCGAGTTCGGAAAAAA

Basic information

species Glycine max
transcript GLYMA16G00540.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312527|gb|BG406178.1|BG406178
EST:     TCTTATCAATTGATGTTTGAGGAAGACCGCCCCAAGTTTATTCCAAAAAG                         GTTTGCATCTATGAGGAGCATTCCTGCATATGAGAATGCTATGAAAGACTG
genomic: TCTTATCAATTGATGTTTGAGGAAGACCGCCCCAAGTTTATTCCAAAAAGgtaccgtgtt ... acttgatcagGTTTGCATCTATGAGGAGCATTCCTGCATATGAGAATGCTATGAAAGACTG
EST: gi|193711794|gb|FK648761.1|FK648761
EST:     TCTTATCAATTGATGTTTGAGGAAGACCGCCCCAAGTTTATTCCAAAAAG                         GTTTGCATCTATGAGGAGCATTCCTGCATATGAGAATGCTATGAAAGACTG
genomic: TCTTATCAATTGATGTTTGAGGAAGACCGCCCCAAGTTTATTCCAAAAAGgtaccgtgtt ... acttgatcagGTTTGCATCTATGAGGAGCATTCCTGCATATGAGAATGCTATGAAAGACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatttgtgctgctcccattgtatacagttgaactaataaatatgacttgatcagGTTTGCATCTATGAGGAGCATTCCTGCATATGAGAATGCTATGAAAGACTGCTTTGAACGGTGTTTGGATTTGTACTTGTGCCCTCGAGTTCGGAAAAAA
                               aactaat  putative branch site (score: 2)
                            ttgaactaataaatat  TA-rich tract