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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcatacaactcttctggttactttaactattgactactaataactcctctgacataatttcttttgtttgagttttcagAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAA

Basic information

species Glycine max
transcript GLYMA16G00400.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602199|gb|DB962692.1|DB962692
EST:     GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG                         AATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
genomic: GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAGgtatcataca ... gagttttcagAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
EST: gi|209717538|gb|BW679672.1|BW679672
EST:     GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG                         AATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
genomic: GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAGgtatcataca ... gagttttcagAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
EST: gi|207811805|gb|GD783054.1|GD783054
EST:     GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG                         AATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
genomic: GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAGgtatcataca ... gagttttcagAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
EST: gi|26047783|gb|CA784461.1|CA784461
EST:     GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG                         AATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
genomic: GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAGgtatcataca ... gagttttcagAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
EST: gi|26048721|gb|CA785174.1|CA785174
EST:     GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG                         AATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
genomic: GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAGgtatcataca ... gagttttcagAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
EST: gi|208296892|gb|GE096530.1|GE096530
EST:     GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG                         AATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
genomic: GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAGgtatcataca ... gagttttcagAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
EST: gi|4295066|gb|AI442280.1|AI442280
EST:     GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG                         AATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
genomic: GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAGgtatcataca ... gagttttcagAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
EST: gi|209719804|gb|BW674956.1|BW674956
EST:     GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG                         AATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
genomic: GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAGgtatcataca ... gagttttcagAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
EST: gi|20813050|gb|BQ297528.1|BQ297528
EST:     GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG                         AATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
genomic: GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAGgtatcataca ... gagttttcagAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
EST: gi|151403853|gb|EV273663.1|EV273663
EST:     GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAG                         AATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT
genomic: GTCACGTGATAAGAACCAGCGTTGGTGGCCGAAATGGTCAATCTAAGCAGgtatcataca ... gagttttcagAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactattgactactaataactcctctgacataatttcttttgtttgagttttcagAATGTTAGTTATATTTCTGAGCATGTTGTGGGAACAGGCTCTTTTGGTGTTGTTTTTCAA
                                                ttttc  CT-rich tract
                             ataatttcttttgttt  TA-rich tract