Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttccttcaatcactcttctcatctcctagcatttttacccctttcctggccataacacgtacaactaatttctgcagGTCTATGGCCTTGATATCAATCCTAGAGCGGTCAAGGTTTCCTGGATAAACTTATACTTGAATGCTTTAGATGAAAATGGCCAGCTAATCTATGACGAGG

Basic information

species Glycine max
transcript GLYMA16G00210.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00210.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv12s0035g01920.t01 (Vitis vinifera), 3'ss of exon 3
---------gtttccttcaatcactcttctcatctcctagc-atttttacccctttcctgg--ccataacacgtacaa--------ctaa-tttctgcagGTCTATGGCCTTGATATCAATCCTAGAGCGGTCAAGGTTTCCTGGATAAACTTATACTTGAATGCTTTAGATGAAAATGGCCAGCTAATCTATGACGAGG
         |||| ||    ||  |||  |    |     | ||   |    || |  |    | || | | ||  ||        |||| ||| | ||||| |||||||||||||| ||||| ||||| || ||| |||| ||||||||||| ||  | |||||||| ||||| ||||| || |  |||||||| |  |
atggttaaagtttgctctggtccttctagttggttaaggaccatgactgatgctattatacatctatgaaatgtctaagcagtcccctaacttttttcagGTGTATGGCCTTGATATTAATCCAAGAGCAGTAAAGATTTCGTGGATAAACTTGTATCTAAATGCTTTGGATGATAATGGTCAACCTATCTATGATGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213618308|gb|DB961388.1|DB961388
EST:     GAAATGGATGGATTTCCATTGCCATGGCCGAGAAGTGGTTACCATACAAG                         GTCTATGGCCTTGATATCAATCCTAGAGCGGTCAAGGTTTCCTGGATAAAC
genomic: GAAATGGATGGATTTCCATTGCCATGGCCGAGAAGTGGTTACCATACAAGgtttccttca ... atttctgcagGTCTATGGCCTTGATATCAATCCTAGAGCGGTCAAGGTTTCCTGGATAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctagcatttttacccctttcctggccataacacgtacaactaatttctgcagGTCTATGGCCTTGATATCAATCCTAGAGCGGTCAAGGTTTCCTGGATAAACTTATACTTGAATGCTTTAGATGAAAATGGCCAGCTAATCTATGACGAGG
                                        aactaat  putative branch site (score: 2)
                                              tttctgc  CT-rich tract
                                        aactaattt  TA-rich tract