1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttttgttgtgatgttatattgagttttttattaaaaaaatgaaggctatatttttttggtgttgtttttgttgatcttttgccgccctatccaattgcagTTGGAAATGGTGGTAATTTGAAGAACTATTTGCTTTTTGGAGCCGCAAATACATATTGGGGGACATCTAGATCCATTCATGGGTCAG
species | Glycine max |
transcript | GLYMA15G42640.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCAGGTCTTTGTAATCCATCCAGAGTTATTGGGAACTTATCTCCAAATG TTGGAAATGGTGGTAATTTGAAGAACTATTTGCTTTTTGGAGCCGCAAATAEST: gi|9257966|gb|BE346175.1|BE346175
genomic: TTCAGGTCTTTGTAATCCATCCAGAGTTATTGGGAACTTATCTCCAAATGgtatgtgtta ... ccaattgcagTTGGAAATGGTGGTAATTTGAAGAACTATTTGCTTTTTGGAGCCGCAAATA
EST: TTCAGGTCTTTGTAATCCATCCAGAGTTATTGGGAACTTATCTCCAAATG TTGGAAATGGTGGTAATTTGAAGAACTATTTGCTTTTTGGAGCCGCAAATA
genomic: TTCAGGTCTTTGTAATCCATCCAGAGTTATTGGGAACTTATCTCCAAATGgtatgtgtta ... ccaattgcagTTGGAAATGGTGGTAATTTGAAGAACTATTTGCTTTTTGGAGCCGCAAATA
ctatatttttttggtgttgtttttgttgatcttttgccgccctatccaattgcagTTGGAAATGGTGGTAATTTGAAGAACTATTTGCTTTTTGGAGCCGCAAATACATATTGGGGGACATCTAGATCCATTCATGGGTCAG
tgttgat putative branch site (score: 4)
ccctatcc putative PPT
ttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgttgtgatgttatattgagttttttattaaaaaaatgaaggctatatttttttggtgttgtttttgttgatcttttgccgccctatccaattgcagTTGGAAATGGTGGTAATTTGAAGAACTATTTGCTTTTTGGAGCCGCAAATACATATTGGGGGACATCTAGATCCATTCATGGGTCAG
- -tgttgtg
- - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttg