Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgagaaaaaacgcgagctgtttgttttcagcatttgtttgtgtttgattattgttcatgtgacttgctgatttttttttaaaaaaatttccccaatgttttagGGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGCTCCAGTAACACT

Basic information

species Glycine max
transcript GLYMA15G42300.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213588618|gb|DB957654.1|DB957654
EST:     TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTG                         GGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
genomic: TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTGgtaactgaga ... aatgttttagGGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
EST: gi|151410306|gb|EV280121.1|EV280121
EST:     TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTG                         GGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
genomic: TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTGgtaactgaga ... aatgttttagGGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
EST: gi|254317135|gb|GR826080.1|GR826080
EST:     TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTG                         GGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
genomic: TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTGgtaactgaga ... aatgttttagGGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
EST: gi|19052548|gb|BM731215.1|BM731215
EST:     TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTG                         GGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
genomic: TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTGgtaactgaga ... aatgttttagGGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
EST: gi|213604537|gb|DB970657.1|DB970657
EST:     TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTG                         GGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
genomic: TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTGgtaactgaga ... aatgttttagGGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
EST: gi|192324396|gb|FK015747.1|FK015747
EST:     TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTG                         GGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
genomic: TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTGgtaactgaga ... aatgttttagGGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
EST: gi|213591664|gb|DB969764.1|DB969764
EST:     TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTG                         GGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
genomic: TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTGgtaactgaga ... aatgttttagGGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
EST: gi|213619735|gb|DB967357.1|DB967357
EST:     TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTG                         GGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC
genomic: TGGCGTTCTTCAGAAGCGTTTCTGCACTTTCTCGACTTCGCTCTCGCGTGgtaactgaga ... aatgttttagGGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgttcatgtgacttgctgatttttttttaaaaaaatttccccaatgttttagGGCCAGCAATCTAATCTTGCGAATTCAGTTAGATGGCTCCAAACTCCGAGCTCCAGTAACACT
                tgctgat  putative branch site (score: 3)
                                      tttcccca  putative PPT
             acttgctgattttttt  TA-rich tract