1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgctctttctcctctgtccctccaaaccttaaattgtttttcccttttcataatcactttttctttttactttctatctaccctttaagtgtttgctcatatcttttttctctatgatgtagGTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATTGTTGAACCTTTTATCCCTCACAATGAGGAGTTTTACCTTAACATTGTCTCAGAGAGAC
species | Glycine max |
transcript | GLYMA15G42140.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAG GTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATTGTTGAACCTEST: gi|19938061|gb|BQ081542.1|BQ081542
genomic: TGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAGgtgctctttc ... tatgatgtagGTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATTGTTGAACCT
EST: TGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAG GTTGATATGGGTGGATGCAAAGGACCTATAACAACTTTCATTGTTGAACCTEST: gi|6963952|gb|AW432645.1|AW432645
genomic: TGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAGgtgctctttc ... tatgatgtagGTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATTGTTGAACCT
EST: TGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAG GTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATTGTTGAACCTEST: gi|7587940|gb|AW703746.1|AW703746
genomic: TGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAGgtgctctttc ... tatgatgtagGTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATTGTTGAACCT
EST: TGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAG GTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATTGTTGAACCT
genomic: TGGATTTGGCAGAAGTTGATTCTTTTGTGAAAGAGCGTCTTGGCAAAGAGgtgctctttc ... tatgatgtagGTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATTGTTGAACCT
tactttctatctaccctttaagtgtttgctcatatcttttttctctatgatgtagGTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATTGTTGAACCTTTTATCCCTCACAATGAGGAGTTTTACCTTAACATTGTCTCAGAGAGAC
tttgctcatatctttt CT-rich tract
atatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctctttctcctctgtccctccaaaccttaaattgtttttcccttttcataatcactttttctttttactttctatctaccctttaagtgtttgctcatatcttttttctctatgatgtagGTTGAGATGGGTGGATGCAAAGGACCTATAACAACTTTCATTGTTGAACCTTTTATCCCTCACAATGAGGAGTTTTACCTTAACATTGTCTCAGAGAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG