Sequence
atgc intronic sequence ATGC exonic sequence...atcaatcatattgcattcctttcactttcttaactttttgcttcatccaatattaattgatgaccttatcttaaaatatttgcaccttgtgtacatgcagGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTTCAGCCAAACCTAGAATGGGTAGCTGCTATGAGGACACAGGATCTTCATCTCTTC
Basic information
species | Glycine max |
transcript | GLYMA15G40510.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19346934|gb|BM891745.1|BM891745EST: AGTTTCGAATTGAAGGACCTCATGGACCTCCAAAAATTTCTTCTTCCAAG GAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTTCAGCC
genomic: AGTTTCGAATTGAAGGACCTCATGGACCTCCAAAAATTTCTTCTTCCAAGgtatacatac ... gtacatgcagGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTTCAGCC
EST:
gi|22522934|gb|BU081745.1|BU081745EST: AGTTTCGAATTGAAGGACCTCATGGACCTCCAAAAATTTCTTCTTCCAAG GAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTTCAGCC
genomic: AGTTTCGAATTGAAGGACCTCATGGACCTCCAAAAATTTCTTCTTCCAAGgtatacatac ... gtacatgcagGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTTCAGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccaatattaattgatgaccttatcttaaaatatttgcaccttgtgtacatgcagGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTTCAGCCAAACCTAGAATGGGTAGCTGCTATGAGGACACAGGATCTTCATCTCTTC
ttatcttaaaatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcaatcatattgcattcctttcactttcttaactttttgcttcatccaatattaattgatgaccttatcttaaaatatttgcaccttgtgtacatgcagGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTTCAGCCAAACCTAGAATGGGTAGCTGCTATGAGGACACAGGATCTTCATCTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - gcattcc
- - - - - - - - - - - cactttc
- - - - - - - - - - - - - - - - - - - - - tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacct