1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgtttgaatttgtttatgtggataggatttcatttgaattttgtttaagtgggttttttgggtgtttgttttgatgctttgttgaatttgatttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAAGCAGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACTTCGG
species | Glycine max |
transcript | GLYMA15G40110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAG GTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAAEST: gi|22541364|gb|BU091207.1|BU091207
genomic: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagttttt ... atttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
EST: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAG GTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAAEST: gi|4292240|gb|AI437734.1|AI437734
genomic: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagttttt ... atttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
EST: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAG GTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAAEST: gi|7926195|gb|AW832221.1|AW832221
genomic: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagttttt ... atttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
EST: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAG GTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAAEST: gi|213599108|gb|DB962215.1|DB962215
genomic: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagttttt ... atttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
EST: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAG GTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
genomic: AGTACGGCTCGCCGAAAATCGTTAACGACGGTGTCACCGTCGCCAAAGAGgtgagttttt ... atttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAA
taagtgggttttttgggtgtttgttttgatgctttgttgaatttgatttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAAGCAGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACTTCGG
aatttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttgaatttgtttatgtggataggatttcatttgaattttgtttaagtgggttttttgggtgtttgttttgatgctttgttgaatttgatttgggaagGTTGAGTTGGAGGATCCGGTTGAGAATATTGGCGCCAAGTTGGTGAGACAAGCAGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACTTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - gggtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa