1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgataagatttaatcttctatatatatttattctcttcctctcgcatgataaaattcatctcatttgatggtactcccccttttggtgatgtgtttaaagCCATCCAAACGCAGTTGGTATATGGTCAAAAGAGCAAATTGAAGCATGGAAACCCATTGTGGATGCTGTTCATGCCAAAGGTGGTATATTCTTCTGTCAG
species | Glycine max |
transcript | GLYMA15G35410.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGGTCTTCTAATTACTGAAGCCAATAGTATTTCACCCACTTGTCAATA CCATCCAAACGCAGNTGGTATATGGTCAAAAGAGCAAATTGAAGCATGGAAEST: gi|192314881|gb|FK010699.1|FK010699
genomic: GGAGGTCTTCTAATTACTGAAGCCAATAGTATTTCACCCACTTGTCAATAgtacgtaatt ... gtgtttaaagCCATCCAAACGCAGTTGGTATATGGTCAAAAGAGCAAATTGAAGCATGGAA
EST: GGAGGTCTTCTAATTACTGAAGCCAATAGTATTTCACCCACTTGTCAATA CCATCCAAACGCAGTTGGTATATGGTCAAAAGAGCAAATTGAAGCATGGAAEST: gi|151401485|gb|EV271299.1|EV271299
genomic: GGAGGTCTTCTAATTACTGAAGCCAATAGTATTTCACCCACTTGTCAATAgtacgtaatt ... gtgtttaaagCCATCCAAACGCAGTTGGTATATGGTCAAAAGAGCAAATTGAAGCATGGAA
EST: GGAGGTCTTCTAATTACTGAAGCCAATAGTATTTCACCCACTTGTCAATA CCATCCAAACGCAGTTGGTATATGGTCAAAAGAGCAAATTGAAGCATGGAA
genomic: GGAGGTCTTCTAATTACTGAAGCCAATAGTATTTCACCCACTTGTCAATAgtacgtaatt ... gtgtttaaagCCATCCAAACGCAGTTGGTATATGGTCAAAAGAGCAAATTGAAGCATGGAA
atgataaaattcatctcatttgatggtactcccccttttggtgatgtgtttaaagCCATCCAAACGCAGTTGGTATATGGTCAAAAGAGCAAATTGAAGCATGGAAACCCATTGTGGATGCTGTTCATGCCAAAGGTGGTATATTCTTCTGTCAG
atttgat putative branch site (score: 5)
aaaattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgataagatttaatcttctatatatatttattctcttcctctcgcatgataaaattcatctcatttgatggtactcccccttttggtgatgtgtttaaagCCATCCAAACGCAGTTGGTATATGGTCAAAAGAGCAAATTGAAGCATGGAAACCCATTGTGGATGCTGTTCATGCCAAAGGTGGTATATTCTTCTGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - cttcctc
- - - - - - - - - - - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatgg