1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaatgatacattgaggttcccttttgaggtttcaatgccatattatgaaatcgtgctaccatcttattaattagcttttggtgttgcattggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTATAAAGGGGTAGACTGTGAAGATGGGGGTCCCTTTGGTGCTATTATAGT
species | Glycine max |
transcript | GLYMA15G20970.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254324640|gb|GR834065.1|GR834065
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254323403|gb|GR835904.1|GR835904
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|308098995|gb|HO760836.1|HO760836
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254342299|gb|GR853436.1|GR853436
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|6846739|gb|AW349029.1|AW349029
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: TGCAGTAGCTTCTGCGTTTGCTNGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254331328|gb|GR843340.1|GR843340
genomic: TGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254340958|gb|GR854686.1|GR854686
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|308098529|gb|HO760270.1|HO760270
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254342298|gb|GR853435.1|GR853435
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254325822|gb|GR838703.1|GR838703
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254332005|gb|GR843748.1|GR843748
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254313721|gb|GR831350.1|GR831350
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254332006|gb|GR843749.1|GR843749
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGA-CACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254340959|gb|GR854687.1|GR854687
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTG-TGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|23728332|gb|BU762218.1|BU762218
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254344502|gb|GR851199.1|GR851199
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254341719|gb|GR852856.1|GR852856
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|23730432|gb|BU763306.1|BU763306
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: GTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|308097867|gb|HO761038.1|HO761038
genomic: GTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGACG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|254325823|gb|GR838704.1|GR838704
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: TTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTEST: gi|5606005|gb|AI900103.1|AI900103
genomic: TTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
EST: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAG CTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
genomic: CAAGAATGGAACTGTTGCAGTAGCTTCTGCGTTTGCTGGACATAAGGAAGgtaatgcttc ... ggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCT
tgaaatcgtgctaccatcttattaattagcttttggtgttgcattggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTATAAAGGGGTAGACTGTGAAGATGGGGGTCCCTTTGGTGCTATTATAGT
tattaat putative branch site (score: 2)
ttattaattagctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgatacattgaggttcccttttgaggtttcaatgccatattatgaaatcgtgctaccatcttattaattagcttttggtgttgcattggctaattagCTATACAGCAAAGGGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCCTATAAAGGGGTAGACTGTGAAGATGGGGGTCCCTTTGGTGCTATTATAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - -ccttttg
- - - - - - - - - - - - - - - - caatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttg