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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatcattttctgctacgtgtatctcgttatttttcttaaatgattgcttggttatatacttgtgatatttaatatctaattctgtcttgacatctggtttctccttctgatttttgttctctttcccctttggttttgcagATTTCGAATGTCTCAACCTGTAGTAACTTTACATTGTTACTACTTTGGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAG

Basic information

species Glycine max
transcript GLYMA15G20400.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193691637|gb|FK629754.1|FK629754
EST:     AAGTACCATAAATCGATATTCAAGAGG                         ATTTCGAATGTCTCAACCTGTAGTAAACTTTAACATTGTTACTACTTTGGG
genomic: AAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttgcagATTTCGAATGTCTCAACCTGTAGT-AACTTT-ACATTGTTACTACTTTGGG
EST: gi|208229889|gb|GE023790.1|GE023790
EST:     AAGTACCATAAATCGATATTCAAGAGG                         ATTTCGAATGTCTCAACCTGTAGTAACTTTACAT
genomic: AAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttgcagATTTCGAATGTCTCAACCTGTAGTAACTTTACAT
EST: gi|192306292|gb|FG996878.1|FG996878
EST:     GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCGAATGTCTCAACCCGTAGTAACTTTACATTGTTACTACTTTGGGTG
genomic: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttgcagATTTCGAATGTCTCAACCTGTAGTAACTTTACATTGTTACTACTTTGGGTG
EST: gi|6724522|gb|AW308921.1|AW308921
EST:     GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGG                         ATTTCGAATGTCTCAACCTGTAGTAACTTTACATTGTTACTACTTTGGGTG
genomic: GCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGgtgagatcat ... ggttttgcagATTTCGAATGTCTCAACCTGTAGTAACTTTACATTGTTACTACTTTGGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacatctggtttctccttctgatttttgttctctttcccctttggttttgcagATTTCGAATGTCTCAACCTGTAGTAACTTTACATTGTTACTACTTTGGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAG
                  ttctgat  putative branch site (score: 3)
           tttctccttctgattt  CT-rich tract
                       atttttgtt  TA-rich tract