Sequence
atgc intronic sequence ATGC exonic sequence...tagacattagtttaagtgtccgtttccgtgttgttttagagtccgtgcttcatacatttctttgtgttatactttctctctatgtttctcttgtttacagGCCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATCGCCAGAAGCTTCTGAACCACACAAGGGGGCCACTTGTTCAGATATTGTG
Basic information
species | Glycine max |
transcript | GLYMA15G19820.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G19820.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G42950.1 (Arabidopsis thaliana), 3'ss of exon 2
tagacattagtttaagtgtccgtttccgtgttgttttagagtccgtgcttcatac---atttctttgtgttatactttctctctatgtttctcttgtttacagGCCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATCGCCAGAAGCTTCTGAACCACACAAGGGGGCCACTTGTTCAGATATTGTG
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--gac-tcaacttatgtggctaatagtattttctttctttgccaaacctgggagtttaatctgtcaactgtatgattgatggctaattgatgatggaaaacagGGAATAATGGTAGCATCAACGGGCAGGGACAAACGTGGTGGAAGAAGTATCGCCAAAAGCTGCTTAACCACACGAGAGGACCACTGGTGCAGATAATGTG
upper sequence: GLYMA15G19820.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0016g00720.t01 (Vitis vinifera), 3'ss of exon 2
-----tag--acattagtttaagtgtccgtttccgtgttgttttagagtccgtgcttcatacatttctttgtgttatactttctctctatgtttctcttgtttacagGCCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATCGCCAGAAGCTTCTGAACCACACAAGGGGGCCACTTGTTCAGATATTGTG
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ggttgtagccacgctggacactataccttcatactttttgtcttgaagat--tacttcgttgctgactttgtctgattctatctgtca-----tcactgaccaacagGGCATAATGGTACCATAAATGGACAGGGCCAAACTTGGTGGAAGAAGTATCGCCAAAAGCTTCTCAACCACACTAGGGGTCCACTTGTTCAGATAATGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10232121|gb|BE801009.1|BE801009EST: GTTTAATTCATGGTCAAAATCTTGTAGATGTTGTCATAACAG GCCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATC
genomic: GTTTAATTCATGGTCAAAATCTTGTAGATGTTGTCATAACAGgtaaggataa ... ttgtttacagGCCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcttcatacatttctttgtgttatactttctctctatgtttctcttgtttacagGCCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATCGCCAGAAGCTTCTGAACCACACAAGGGGGCCACTTGTTCAGATATTGTG
tactttctctctatgt CT-rich tract
ttatacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagacattagtttaagtgtccgtttccgtgttgttttagagtccgtgcttcatacatttctttgtgttatactttctctctatgtttctcttgtttacagGCCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATCGCCAGAAGCTTCTGAACCACACAAGGGGGCCACTTGTTCAGATATTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - -ttccgtg
- - - - - - - - - - - - - - - - - - - - -tccgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttgtg