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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattagaattaaaattataattgaatcttggagcgttggatttgttatgttttgttttcaatattgccatttttaaaaataatttctgtgttttctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG

Basic information

species Glycine max
transcript GLYMA15G18170.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G18170.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 3'ss of exon 2
gtattagaattaaaattataattgaatcttggagcgttggatttgttatgttttgttttcaatattgccatttttaaaaataatttctgtgttttctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG
                                   ||     || ||||  |     | |||            |  |  | || |     |||    ||   || | |||||  ||||   |||||| || || ||||||||||||||||| || |||||||| || |||||||||||||||||||||||| | ||||||||
-----------------------------------gtaaacatttttatcctccaaatacaaatacttggaaactgtagttgatcttctcttttatccttgatagGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8282865|gb|BE020426.1|BE020426
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|207692924|gb|GD675961.1|GD675961
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAG
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAG
EST: gi|209702466|gb|BW667098.1|BW667098
EST:     AGCTGATTTTTAACACAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|17023603|gb|BM094637.1|BM094637
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|298195246|gb|HO043774.1|HO043774
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgttttcaatattgccatttttaaaaataatttctgtgttttctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG
                                 tttctgtgttttcttt  CT-rich tract
                   atttttaaaaataatt  TA-rich tract