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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattagaattaaaattataattgaatcttggagcgttggatttgttatgttttgttttcaatattgccatttttaaaaataatttctgtgttttctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG

Basic information

species Glycine max
transcript GLYMA15G18170.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G18170.2 (Glycine max), 3'ss of exon 2
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 3'ss of exon 2
gtattagaattaaaattataattgaatcttggagcgttggatttgttatgttttgttttcaatattgccatttttaaaaataatttctgtgttttctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG
                                   ||     || ||||  |     | |||            |  |  | || |     |||    ||   || | |||||  ||||   |||||| || || ||||||||||||||||| || |||||||| || |||||||||||||||||||||||| | ||||||||
-----------------------------------gtaaacatttttatcctccaaatacaaatacttggaaactgtagttgatcttctcttttatccttgatagGAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410194|gb|EV280009.1|EV280009
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|192327716|gb|FK021351.1|FK021351
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|17023603|gb|BM094637.1|BM094637
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|192295535|gb|FG988109.1|FG988109
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|8282865|gb|BE020426.1|BE020426
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|207692924|gb|GD675961.1|GD675961
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAG
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAG
EST: gi|10232891|gb|BE801779.1|BE801779
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|58021409|gb|CX708150.1|CX708150
EST:     GATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: GATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|151400307|gb|EV270121.1|EV270121
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|58015969|gb|CX702711.1|CX702711
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|298195246|gb|HO043774.1|HO043774
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|209702466|gb|BW667098.1|BW667098
EST:     AGCTGATTTTTAACACAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|33388304|gb|CA851511.1|CA851511
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|209728367|gb|BW660005.1|BW660005
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|192294770|gb|FG986619.1|FG986619
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|151404968|gb|EV274782.1|EV274782
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|151395296|gb|EV265167.1|EV265167
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|192307998|gb|FG998981.1|FG998981
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|58024451|gb|CX711192.1|CX711192
EST:     GATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: GATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|57574809|gb|CX547784.1|CX547784
EST:     AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: AGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
EST: gi|192307999|gb|FG998982.1|FG998982
EST:     TTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAG                         CAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT
genomic: TTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGgtattagaat ... ctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgttttcaatattgccatttttaaaaataatttctgtgttttctttttccagCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGG
                                 tttctgtgttttcttt  CT-rich tract
                   atttttaaaaataatt  TA-rich tract