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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagtgttgtgtgagaatgcaaattgggtttagaactttagaatatagtgcgcttcatgaaagagagattcgttgtgcttatgattagttggtttgtgttgtcttagGTTTCTGCTGCTGAGTATGACAGACAAGCAGTTGCTGACCATGCTAATAATCTTGCTTCGAAAATTCGTGGCAACTTGACCAACTCCTTAAAAGCACTTG

Basic information

species Glycine max
transcript GLYMA15G15310.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15310.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 3'ss of exon 2
gtaaaagtgttgtgtgagaatgcaaattgggtttagaactttagaatatagtgcgct-tcatgaaagagagattcgttgtgctt-------atgatta-gttggtttgtgttgtcttagGTTTCTGCTGCTGAGTATGACAGACAAGCAGTTGCTGACCATGCTAATAATCTTGCTTCGAAAATTCGTGGCAACTTGACCAACTCCTTAAAAGCACTTG
                   | ||  |||   | | |   ||  | ||    ||   | ||||    | | | | | |||||          || |||| |    ||     |     |||||||  |  |||  |||||||||||||| |||||||| ||||| || ||||| || || ||||| ||  |||||||||| || ||  | ||||| || |
-------------------aggcctattacctgtggcctttgggcatcggctgttttctcattcttgtgtgttgcattgtgtcctgcataaatcattaagcccattctctgtacaacagGTTTCATCCCCTGGATATGACAGACAAGCTGTTGCTGATCATGCAAACAATCTCGCCTCTAAAATCCGAAGCAACTTGACTAATTCAATGAAAGCTCTGG

upper sequence: GLYMA15G15310.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G073774_T01 (Zea mays), 3'ss of exon 2
gtaaaagtgttgtgtgagaatgcaaattgggtttagaactttagaatatagtgcgcttcatgaaagagagattcgttgtgcttatgattagttggtttgtgttgtcttagGTTTCTGCTGCTGAGTATGACAGACAAGCAGTTGCTGACCATGCTAATAATCTTGCTTCGAAAATTCGTGGCAACTTGACCAACTCCTTAAAAGCACTTG
    ||   ||   || |      |       |||      | ||| ||  |    |  || |    ||     | ||   ||    ||||     ||   ||||   |||||||  || |||  |||||||||||||| |||||||| ||||| || |||||||| |||||||| |||  ||||||||| |||||  | ||||| || |
-ctcaaccatttcttgtggtcattagcaattctta-----ctcgaacatgttattatctattatcctgattgatgctgaattt----ttaggcatattaccttgtaacagGTTTCCTCTCCTGGATATGACAGACAAGCTGTTGCTGATCATGCAAACAATCTTGCCTCGAAAATCCGTATCAACTTGACTAACTCAATGAAAGCTCTAG

upper sequence: GLYMA15G15310.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G145595_T02 (Zea mays), 3'ss of exon 2
gtaaaagtgttgtgtgagaatgcaaattgggtttagaactttagaatatagtgcgcttcatgaaag-agagattcgttgtgcttatgattagttggtttgtgttgtcttagGTTTCTGCTGCTGAGTATGACAGACAAGCAGTTGCTGACCATGCTAATAATCTTGCTTCGAAAATTCGTGGCAACTTGACCAACTCCTTAAAAGCACTTG
    |  | || | | | |      ||| | | | ||  | || |   |    |  |  || ||   |   || | |||  | ||  || | |||   || |||||  ||||| ||  |  | |  |||||||| || |  |||||||||||||| ||||||||||| || ||||| ||  |||||||||| || ||  | ||||| || |
---taccttttctcttaaacc----attagctat-gatgtgtataccttttccctttgtatcaagttattcatcccttgacccta--atcatttgtgatg-gttgtaatagGTCTCATCACCAGGATATGACAGGCAGGTTGTTGCTGACCATGCAAATAATCTTGCATCTAAAATCCGCAGCAACTTGACTAATTCAATGAAAGCTCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcatgaaagagagattcgttgtgcttatgattagttggtttgtgttgtcttagGTTTCTGCTGCTGAGTATGACAGACAAGCAGTTGCTGACCATGCTAATAATCTTGCTTCGAAAATTCGTGGCAACTTGACCAACTCCTTAAAAGCACTTG
                                              ttgtctt  CT-rich tract
                          ttatgatta  TA-rich tract