1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttacctttgagagttggtttatttgatcctgaattacattaactggttcatctacctatccatctctctctcccctgacttatgcttgtatggctggcagGTTATTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCG
species | Glycine max |
transcript | GLYMA15G14550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGAACGCTGTAGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAG GTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGEST: gi|18730522|gb|BM525924.1|BM525924
genomic: GGGAACGCTGCCGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAGgtgggttttg ... tggctggcagGTTATTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAG
EST: GGGAACGCTGCCGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAG GTTATTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGEST: gi|192319699|gb|FK011851.1|FK011851
genomic: GGGAACGCTGCCGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAGgtgggttttg ... tggctggcagGTTATTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAG
EST: GGGAACGCTGTAGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAG GTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGEST: gi|17153911|gb|BM143844.1|BM143844
genomic: GGGAACGCTGCCGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAGgtgggttttg ... tggctggcagGTTATTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAG
EST: GGGAACGCTGTAGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAG GTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGEST: gi|26269049|gb|CA820112.1|CA820112
genomic: GGGAACGCTGCCGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAGgtgggttttg ... tggctggcagGTTATTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAG
EST: GGGAACGCTGTAGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAG GTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGEST: gi|120533109|gb|EH261242.1|EH261242
genomic: GGGAACGCTGCCGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAGgtgggttttg ... tggctggcagGTTATTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAG
EST: GGGAACGCTGCCGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAG GTGATTAATGCGCAACCAAGGAGGTCTGGTGG
genomic: GGGAACGCTGCCGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAGgtgggttttg ... tggctggcagGTTATTAATGCA-AACAAAGGAGGTCTGGTGG
gttcatctacctatccatctctctctcccctgacttatgcttgtatggctggcagGTTATTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCG
ccctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacctttgagagttggtttatttgatcctgaattacattaactggttcatctacctatccatctctctctcccctgacttatgcttgtatggctggcagGTTATTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- acctttg
- - - - - - gttggtt
- - - - - - - - - - - - - tcctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt