Sequence
atgc intronic sequence ATGC exonic sequence...gtttttatttccttgtagagtgtccgactttattttaaatttatatttcttgtatatctttatattttctttacatcaatatttatgtcttactggacagGGTGACAACATTCCACCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAG
Basic information
species | Glycine max |
transcript | GLYMA15G14470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G14470.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G703415_T02 (Zea mays), 3'ss of exon 3
gtttttatttccttgtagagtgtccgactttattttaaatttatatttcttgtatatctttatattttctttacatcaatatttatgtcttactgga----cagGGTGACAACATTCCACCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAG
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-attttcttctttagttaggctgctatctgttcatta--ttcttttgtactgc-tatctgttgattacttatttttcgacttttattttttaaaaaatattcagGGTGAGAACGTTCCTGCTCCGTTTATGACATTTGAGGCCACTGGATTCCCTCCAGAGATTCTGAGAGAG
upper sequence: GLYMA15G14470.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0020g00470.t01 (Vitis vinifera), 3'ss of exon 2
gtttttatttccttgtagagtgtccgactttattttaaatt-tatatttcttgtatatctttatattttctttac-atcaatatttatgtcttactggacagGGTGACAACATTCCACCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAG
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-tttttaat-cactgttaattctgcttttatatttttggctctgtagtgtttttggtttgttatgaattgattatgactaattttttaattaaattccatagGGTGAAAATGTGCCTCCACCTTTAATGACCTTTGAAGCAACTGGTTTCCCTCCAGAGATATTGAGAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcttgtatatctttatattttctttacatcaatatttatgtcttactggacagGGTGACAACATTCCACCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAG
gtcttac putative branch site (score: 3)
tcttact CT-rich tract
tgtatatctttatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttttatttccttgtagagtgtccgactttattttaaatttatatttcttgtatatctttatattttctttacatcaatatttatgtcttactggacagGGTGACAACATTCCACCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAG
- - - - - ccttgta