Sequence
atgc intronic sequence ATGC exonic sequence...aaaaaagcctcactaggaaggacatgatgacaagtttatgtataggttgtgttgtagtttaagcttttctaatagttttctattctcgtcttaatttcagGTGTGGTTATGAGTTTTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCAACAGACATGCCAGTGTGCATATTGGGATGAAGATAACTCTGAAGACTCA
Basic information
species | Glycine max |
transcript | GLYMA15G13240.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G13240.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G19670.1 (Arabidopsis thaliana), 3'ss of exon 2
aaaaaagcctcactaggaaggacatgatgacaagtttatgtataggttg-tgttgtagtttaagcttttctaatagttttctattctcgtcttaatttcagGTGTGGTTATGAGTTTTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCAACAGACATGCCAGTGTGCATATTGGGATGAAGATAACTCTGAAGACTCA
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ttttttttctcgcctacgtttaaatc-tagtattctagagcaagtgtttcttttgcgattcttacgcatataaatgtcaaaactctctgtgttttccgcagATGCGGGCATGAGTTTTGCTACTCGTGTGGAGCAGAGTACAGAGAAGGGCAACAGACTTGCACGTGTGCTTTTTGGGACGATGATGAAGAAGAACAAGAA
upper sequence: GLYMA15G13240.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv10s0042g01130.t01 (Vitis vinifera), 3'ss of exon 2
aaaaaagcctcactaggaa-ggacatgatga-caagtttatgtataggttgtgttgtagtttaagcttttctaatagttttctattctcgtcttaatttcagGTGTGGTTATGAGTTTTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCAACAGACATGCCAGTGTGCATATTGGGATGAAGATAACTCTGAAGACTCA
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-tttatttttcatttgcactggataaaccgaatgagctcaag-gttgacatttcggtttatttagacatgatcacacttgcttacatgcgtaacaactgcagGTGTGGGCATGAGTTCTGCTATTCTTGTGGTGCGGAGTACAGAGACGGACAACAGACCTGTCAATGTGCATTTTGGGACGAAGAGAACTCTGAAGACTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51344881|gb|CO985614.1|CO985614EST: TGTCGTAGAATGATTGAGCTTACTCAAGGCTGTTACCACATGACATGCTG GTGTGGTTATGAGTTTTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCA
genomic: TGTCGTAGAATGATTGAGCTTACTCAAGGCTGTTACCACATGACATGCTGgtaagatacc ... ttaatttcagGTGTGGTTATGAGTTTTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCA
EST:
gi|254339996|gb|GR858121.1|GR858121EST: TGTCGTAGAATGATTGAGCTTACTCAAGGCTGTTACCACATGACATGCTG GTGTGGTTATGAGTTTTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCA
genomic: TGTCGTAGAATGATTGAGCTTACTCAAGGCTGTTACCACATGACATGCTGgtaagatacc ... ttaatttcagGTGTGGTTATGAGTTTTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgtgttgtagtttaagcttttctaatagttttctattctcgtcttaatttcagGTGTGGTTATGAGTTTTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCAACAGACATGCCAGTGTGCATATTGGGATGAAGATAACTCTGAAGACTCA
ttttctattctcgtct CT-rich tract
ttttctaatagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaaagcctcactaggaaggacatgatgacaagtttatgtataggttgtgttgtagtttaagcttttctaatagttttctattctcgtcttaatttcagGTGTGGTTATGAGTTTTGCTATTCATGTGGTGCGGAATACCGAGAAGGGCAACAGACATGCCAGTGTGCATATTGGGATGAAGATAACTCTGAAGACTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
aaaaaag
- - - -cctcact
- - - - - - - - - - - - tgatgac
- - - - - - - - - - - - - - - - - - - - - - ggttgtg