1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttttttagtttcttattttgatggacaagaaaatttggtgtggtgtggactgtggagtaggatgtttctcaattatgtttttttgggcttgtttgacagGTTGGGCTTGGAGATACTTCTGGTGGTGACAGTCCGAATGATCACTATTGCTGGATGCGTCCGGAGGACATGGACTATGACCGCCCTGTGACTGAATGCC
species | Glycine max |
transcript | GLYMA15G13080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAAGAGTTTTAATAGCACTGCTGATACCATCACCACCCTTGCTGCTCAG GTTGGGCTTGGAGATACTTCTGGTGGTGACAGTCCGAATGATCACTATTGC
genomic: TCAAGAGTTTTAATAGCACTGCTGATACCATCACCACCCTTGCTGCTCAGgtatccccat ... tgtttgacagGTTGGGCTTGGAGATACTTCTGGTGGTGACAGTCCGAATGATCACTATTGC
gtggactgtggagtaggatgtttctcaattatgtttttttgggcttgtttgacagGTTGGGCTTGGAGATACTTCTGGTGGTGACAGTCCGAATGATCACTATTGCTGGATGCGTCCGGAGGACATGGACTATGACCGCCCTGTGACTGAATGCC
cttgttt CT-rich tract
tcaattatgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttagtttcttattttgatggacaagaaaatttggtgtggtgtggactgtggagtaggatgtttctcaattatgtttttttgggcttgtttgacagGTTGGGCTTGGAGATACTTCTGGTGGTGACAGTCCGAATGATCACTATTGCTGGATGCGTCCGGAGGACATGGACTATGACCGCCCTGTGACTGAATGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - ttgatgg
- - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - tttggtg
- - - - - - - - - - - - - - - - - - tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - -actgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatgtt