1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctttagcttacatgattaattttactacaacgttgccattaacataatatttccattttcttgcacttttcttgggatggctttgggttccctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGAGCATTAGTCGTGAGAAATATA
species | Glycine max |
transcript | GLYMA15G12980.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGAATCAGATTCAGATGATGACGACGACTACGAATATGACCCTTTG GAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATEST: gi|12773212|gb|BG238139.1|BG238139
genomic: TTGGTGAATCAGATTCAGATGATGACGACGACTACGAATATGACCCTTTGgtttgttttg ... cctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
EST: TTGGTGAATCAGATTCAGATGATGACGACGACTACGAATATGACCCTTTG GAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATEST: gi|213603753|gb|DB956290.1|DB956290
genomic: TTGGTGAATCAGATTCAGATGATGACGACGACTACGAATATGACCCTTTGgtttgttttg ... cctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
EST: TTGGTGAATCAGATTCAGATGATGACGACGACTACGAATATGACCCTTTG GAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATEST: gi|192295897|gb|FG992663.1|FG992663
genomic: TTGGTGAATCAGATTCAGATGATGACGACGACTACGAATATGACCCTTTGgtttgttttg ... cctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
EST: TTGGTGAATCAGATTCAGATGATGACGACGACTACGAATATGACCCTTTG GAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
genomic: TTGGTGAATCAGATTCAGATGATGACGACGACTACGAATATGACCCTTTGgtttgttttg ... cctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGAT
aatatttccattttcttgcacttttcttgggatggctttgggttccctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGAGCATTAGTCGTGAGAAATATA
ttccctgtt CT-rich tract
attttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttagcttacatgattaattttactacaacgttgccattaacataatatttccattttcttgcacttttcttgggatggctttgggttccctgttgcagGAAAACCGAATATCAGATACCACTGCTGCTGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGAGCATTAGTCGTGAGAAATATA
- - - - tacatga
- - - - - - - - - - - - - - - -gttgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggatgg