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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttagtacctgcggtgtgtaggtcatagaatttgatgtttattttcttgcactcagttattatcttctactcattttagcatactgcctttatgaactagATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTGATGAAATGGAGTATGCGGCAGACGATAATGAAATGGCAGAGGTAGAAGA

Basic information

species Glycine max
transcript GLYMA15G12980.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G12980.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0568g00010.t01 (Vitis vinifera), 3'ss of exon 1
cttagtacctgcggtgtgtaggtcatagaatttgatgtttattttcttgcactcagttattatcttctactcattttagcatactgcctttatgaactagATATCGAGT-ATCAAAAACGGCATCTGGA-AAACATGTCTCAATACCATGGTGATGAAATGGAGTATGCGGCAGACGATAATGAAATGGCAGAGGTAGAAGA--------------------------
                             ||    ||||| | ||| ||       |||    ||  |  || ||||      ||   | | |||| | |||   || | |       || ||    |    | ||||| ||  |||| || ||||| ||||| ||||||||||| ||| ||||||||||||| ||||| ||                          
---------------------------atatcaagtgtttttgttcatgattcatattagcccctgtttttctttttctttctcttgttatttgaaat-gatgctgactcagttttcgcgtcactaagGTGGATATGTCCCAGCACCAAGGGGATGAGATGGATTATGCGGCAGATGATTATGAAATGGCAGAAGTAGATGATGATATGTACTTCCGTGGTAGAGTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303675|gb|FG998657.1|FG998657
EST:     TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAG                         ATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTG
genomic: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAGgtcagatttt ... tatgaactagATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTG
EST: gi|208075809|gb|GD876866.1|GD876866
EST:     TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAG                         ATATCGAGTATCAAAAAACGGCATCTGGAAAACAT
genomic: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAGgtcagatttt ... tatgaactagATATCGAGTATCAAAAA-CGGCATCTGGAAAACAT
EST: gi|192295897|gb|FG992663.1|FG992663
EST:     TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAG                         ATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTG
genomic: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAGgtcagatttt ... tatgaactagATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcactcagttattatcttctactcattttagcatactgcctttatgaactagATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTGATGAAATGGAGTATGCGGCAGACGATAATGAAATGGCAGAGGTAGAAGA
                                      ctgccttt  CT-rich tract
           ttattatctt  TA-rich tract