1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctctttaattcttttaataatactctgtccaattttcagctttgtgacaaaagtgaaacctttctttctgcattgcagAAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATG
species | Glycine max |
transcript | GLYMA15G12930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAG AAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAEST: gi|192314434|gb|FK008404.1|FK008404
genomic: CCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAGgtctctttaa ... tgcattgcagAAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAA
EST: CCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAG AAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAEST: gi|192314435|gb|FK008405.1|FK008405
genomic: CCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAGgtctctttaa ... tgcattgcagAAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAA
EST: CCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAG AAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAEST: gi|27446180|gb|CA953303.1|CA953303
genomic: CCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAGgtctctttaa ... tgcattgcagAAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAA
EST: CCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAG AAATACAGGCTTGGTAAGCAATCTGGGAAAGATGTGGGTGAAGGATGCAAAEST: gi|193640141|gb|FK590944.1|FK590944
genomic: CCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAGgtctctttaa ... tgcattgcagAAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAA
EST: CCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAG AAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAA
genomic: CCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAGgtctctttaa ... tgcattgcagAAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAA
tctgtccaattttcagctttgtgacaaaagtgaaacctttctttctgcattgcagAAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATG
cctttctttctgcatt CT-rich tract
aattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctttaattcttttaataatactctgtccaattttcagctttgtgacaaaagtgaaacctttctttctgcattgcagAAATACAGGCTTGGTAAGCAATCTGGGAAGGATGTGGGTGAAGGATGCAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG