1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacataatatttaatttaattttgtggtgattttaattaatttttacaaatctataagttttaattactaaaattgtgaattaatatatgtatacttgtttattcagCTTGCACAGTTGCAGGTGGAGCTTCAACGCATGAACTCTGAGAACAAGAAGCTGAAAGAGATGCTCAGCCATGTGACCGGTAACTACACCGCCTTGCAGA
species | Glycine max |
transcript | GLYMA15G11680.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACGGGGTTTCATCTGATGCAGAAAATAAGCGAGCCAAAACCACTGAG CTTGCACAGTTGCAGGTGGAGCTTCAACGCATGAACTCTGAGAACAAGAAGEST: gi|254346516|gb|GR856238.1|GR856238
genomic: GACGGGGTTTCATCTGATGCAGAAAATAAGCGAGCCAAAACCACTGAGgtacataata ... gtttattcagCTTGCACAGTTGCAGGTGGAGCTTCAACGCATGAACTCTGAGAACAAGAAG
EST: ATGACGGGGTTTCATCTGATGCAGAAAATAAGCGAGCCAAAACCACTGAG CTTGCACAGTTGCAGGTGGAGCTTCAACGCATGAACTCTGAGAACAAGAAGEST: gi|254327037|gb|GR836646.1|GR836646
genomic: ATGACGGGGTTTCATCTGATGCAGAAAATAAGCGAGCCAAAACCACTGAGgtacataata ... gtttattcagCTTGCACAGTTGCAGGTGGAGCTTCAACGCATGAACTCTGAGAACAAGAAG
EST: ATGACGGGGTTTCATCTGATGCAGAAAATAAGCGAGCCAAAACCACTGAG CTTGCACAGTTGCAGGTGGAGCTTCAACGCATGAACTCTGAGAACAAGAAG
genomic: ATGACGGGGTTTCATCTGATGCAGAAAATAAGCGAGCCAAAACCACTGAGgtacataata ... gtttattcagCTTGCACAGTTGCAGGTGGAGCTTCAACGCATGAACTCTGAGAACAAGAAG
tataagttttaattactaaaattgtgaattaatatatgtatacttgtttattcagCTTGCACAGTTGCAGGTGGAGCTTCAACGCATGAACTCTGAGAACAAGAAGCTGAAAGAGATGCTCAGCCATGTGACCGGTAACTACACCGCCTTGCAGA
cttgttt CT-rich tract
ttttaattactaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacataatatttaatttaattttgtggtgattttaattaatttttacaaatctataagttttaattactaaaattgtgaattaatatatgtatacttgtttattcagCTTGCACAGTTGCAGGTGGAGCTTCAACGCATGAACTCTGAGAACAAGAAGCTGAAAGAGATGCTCAGCCATGTGACCGGTAACTACACCGCCTTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG