1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgtgctctcttttaagctgactactaaattgagggagttttaaattaattaactgctcttattaacattaacaaacaatcattatttcctttgtagcagGGTCCTCTTGCTGCTCCAGTTCTTCAACACCTGACAAAAGAGGATTTAAGCAAGATGTACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGTGTGCAGT
species | Glycine max |
transcript | GLYMA15G11590.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGATGTGTCATGGCACATCCATGATGAGAGATCTCTTCTTGCTTTGCAG GGTCCTCTTGCTGCTCCAGTTCTTCAACACCTGACAAAAGAGGATTTAAGCEST: gi|14990460|gb|BI316133.1|BI316133
genomic: GTGATGTGTCATGGCACATCCATGATGAGAGATCTCTTCTTGCTTTGCAGgtcatttatc ... tttgtagcagGGTCCTCTTGCTGCTCCAGTTCTTCAACACCTGACAAAAGAGGATTTAAGC
EST: GTGATGTGTCATGGCACATCCATGATGAGAGATCTCTTCTTGCTTTGCAG GGTCCTCTTGCTGCTCCAGTTCTTCAACACCTGACAAAAGAGGATTTAAGCEST: gi|19053297|gb|BM731964.1|BM731964
genomic: GTGATGTGTCATGGCACATCCATGATGAGAGATCTCTTCTTGCTTTGCAGgtcatttatc ... tttgtagcagGGTCCTCTTGCTGCTCCAGTTCTTCAACACCTGACAAAAGAGGATTTAAGC
EST: GTGATGTGTCATGGCACATCCATGATGAGAGATCTCTTCTTGCTTTGCAG GGTCCTCTTGCTGCTCCAGTTCTTCAACACCTGACAAAAGAGGATTTAAGC
genomic: GTGATGTGTCATGGCACATCCATGATGAGAGATCTCTTCTTGCTTTGCAGgtcatttatc ... tttgtagcagGGTCCTCTTGCTGCTCCAGTTCTTCAACACCTGACAAAAGAGGATTTAAGC
ttaattaactgctcttattaacattaacaaacaatcattatttcctttgtagcagGGTCCTCTTGCTGCTCCAGTTCTTCAACACCTGACAAAAGAGGATTTAAGCAAGATGTACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGTGTGCAGT
tcattatttccttt CT-rich tract
ttattaacattaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgctctcttttaagctgactactaaattgagggagttttaaattaattaactgctcttattaacattaacaaacaatcattatttcctttgtagcagGGTCCTCTTGCTGCTCCAGTTCTTCAACACCTGACAAAAGAGGATTTAAGCAAGATGTACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGTGTGCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- -tgctctc
- - - - - - - - gctgact
- - - - - - - - - - - - - - - -gagggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaca