1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atattctctttgctctctttgtttcatcatcgtttgatgtttaattagaaaattgtgcatcttctaaatttgacatggtattttcttattgaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTCTTGAGGAGAACTCGTTCAGGGGGAGGACTGCTGATTTCTTTTACATGCT
species | Glycine max |
transcript | GLYMA15G11350.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTCEST: gi|151397563|gb|EV267436.1|EV267436
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG ACTTGGA-TTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTCEST: gi|58016888|gb|CX703630.1|CX703630
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
EST: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGG ACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
genomic: ATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGgtaaaatttc ... gaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTC
tagaaaattgtgcatcttctaaatttgacatggtattttcttattgaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTCTTGAGGAGAACTCGTTCAGGGGGAGGACTGCTGATTTCTTTTACATGCT
tattttcttattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattctctttgctctctttgtttcatcatcgtttgatgtttaattagaaaattgtgcatcttctaaatttgacatggtattttcttattgaatgggcagACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTCTTGAGGAGAACTCGTTCAGGGGGAGGACTGCTGATTTCTTTTACATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - tgctctc
- - - - - - - - - - - - - - - - - tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacatg