Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatatttgtaaattccattctgccaataatactgctcttgaattatttgctgggttgttaaaaaggccatatgacatttatcctggcaagtttaatgtcttgtacaatcattcttgtagACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAG

Basic information

species Glycine max
transcript GLYMA15G09090.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G09090.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 2
gtattatatttgtaaattccattctgccaataatactgctcttgaattatttgctgggttgttaaaaaggccatatgacatttatcctggcaagttta-atgtcttgtacaatcattcttgtagACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAG
           ||| |  | | | ||  |||    |  |     | || | | |    ||||   |  ||  ||||||   || ||    |   |||| || | |  |   ||  ||  || |||| || |||||||||||||| || ||||| || || || ||||||||||||||||| |||
-----------gtataa-ctactttg--aatgc--ccacaagcaatttctcttccaaattgt--gagtggaaatatga---ttgtc--aacggttttatatatttcttgtgatgcttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATTGTTTTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193732894|gb|FK668223.1|FK668223
EST:     GTCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAG                         ACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATT
genomic: GTCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAGgtattatatt ... attcttgtagACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATT
EST: gi|193384294|gb|FK349754.1|FK349754
EST:     ATTGGAGGCAAAAAT-GGGAACCCAAACAG                         ACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATT
genomic: ATTGGAGGCAAAAATGGGGAACCCAAACAGgtattatatt ... attcttgtagACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATT
EST: gi|7042489|gb|AW472383.1|AW472383
EST:     GTCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAG                         ACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATT
genomic: GTCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAGgtattatatt ... attcttgtagACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATT
EST: gi|193386010|gb|FK352380.1|FK352380
EST:     ATTGGAGGCAAAAATGGGGAACCCAAACAG                         ACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATT
genomic: ATTGGAGGCAAAAATGGGGAACCCAAACAGgtattatatt ... attcttgtagACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggccatatgacatttatcctggcaagtttaatgtcttgtacaatcattcttgtagACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAG
                         gtttaat  putative branch site (score: 4)
                                           tcattctt  putative PPT
                       aagtttaat  TA-rich tract