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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaagtgagtattcgcatttttcagtcttaattatatataggatgcaaaaattataatttatttttattattgtgtgtttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTCACGTAGCCATGGCGCCTCAGAGAGCCAAGCCCTTCTATGCCTCTTTAGT

Basic information

species Glycine max
transcript GLYMA15G08610.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G08610.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g14040.1 (Oryza sativa), 3'ss of exon 4
--gtgagtaagtgagtattcgcattttt-----cagtcttaattatatataggatgcaaaaattataat-ttatttttattattgt-------gtgtttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTCACGTAGCCATGGCGCCTCAGAGAGCCAAGCCCTTCTATGCCTCTTTAGT
    ||||||   | ||   |||||| |     |||  || |  ||   || | || |  |  | |  | |||||   |   ||          | |  |   |||| ||||| ||||| || |||||| |||||||||||||||| || |||||||| || || ||| | |||   | ||| ||||| |||||||| ||||||||
gtaggagtaatataataca-gcatttctagtcccagatttgaaaattcttaagctgtagtagctttgttgttattgacaccgttactaagctgatatactattcagTCAGTCAATTTACCTTATATGGAATCCTGAAGGGTAACAAGCCAGATTTTCATGTGGCTATGCCACCTGCTAAAGCAAAGCCATTCTATGCTTCTTTAGT

upper sequence: GLYMA15G08610.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv10s0003g00640.t01 (Vitis vinifera), 3'ss of exon 5
gtgagtaagtgagtattcgcatttttcagtcttaatt----atatataggatgcaaa---aattataatttat--ttttattattgtgtgtttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTCACGTAGCCATGGCGCCTCAGAGAGCCAAGCCCTTCTATGCCTCTTTAGT
     ||| |   |    | ||  |  |    | |      | | ||   || |||    | |   | ||||   || || |  ||| ||  | |  |||||||||||||||| ||||||||| |  ||||||||||||| || |||||||| || || ||| |||| || | ||| |||||||| ||||| || || ||
agttctaaattgcttcaagtatcatgaaagagtgaagggagaaaaatgatatacaagtggagtggcattttacagttctaatgctgtttgggtgtttcagTGAGTCAGTTTACATTGTATGGAATTTTGAAGGGTAACAAGCCAGATTTTCATGTGGCAATGCCGCCCCAAAAAGCAAAGCCCTTTTATGCTTCGTTCGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31458281|gb|CD400309.1|CD400309
EST:     GAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: GAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|4292154|gb|AI441864.1|AI441864
EST:     CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTNGA-GGGTAACAAACCGGATTNT
genomic: CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCT-GAAGGGTAACAAACCGGATT-T
EST: gi|7326886|gb|AW620684.1|AW620684
EST:     CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|7326731|gb|AW620529.1|AW620529
EST:     CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|58020386|gb|CX707128.1|CX707128
EST:     CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|7326594|gb|AW620392.1|AW620392
EST:     CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
EST: gi|298180580|gb|HO025667.1|HO025667
EST:     CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGG                         TGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC
genomic: CAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGgtgagtaagt ... tttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatataggatgcaaaaattataatttatttttattattgtgtgtttttaacagTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTCACGTAGCCATGGCGCCTCAGAGAGCCAAGCCCTTCTATGCCTCTTTAGT
                                           tgttttt  CT-rich tract
              aaaaattataatttat  TA-rich tract