1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccaaaggaaaccatttacccatatctttcccagggtgaaaataaatcattcacaatttcttgcctacaccttatggatcctgatgttctaaagttttcagAATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAATCCTGAACCCGCTGATTATAACTATGGCTTTGGTGCGACAGTTGATATAC
species | Glycine max |
transcript | GLYMA15G07480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAAAACATCAAGCCAATCAAGTTATAGCGGGGGTGCATTTTACACTACA AATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAATEST: gi|16346749|gb|BI972344.1|BI972344
genomic: GAAAAACATCAAGCCAATCAAGTTATAGCGGGGGTGCATTTTACACTACAgtgagtttgt ... aagttttcagAATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAAT
EST: GAAAAACATCAAGCCAATCAAGTTATAGCGGGGGTGCATTTTACACTACA AATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAATEST: gi|16346347|gb|BI971942.1|BI971942
genomic: GAAAAACATCAAGCCAATCAAGTTATAGCGGGGGTGCATTTTACACTACAgtgagtttgt ... aagttttcagAATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAAT
EST: GAAAAACATCAAGCCAATCAAGTTATAGCGGGGGTGCATTTTACACTACA AATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAATEST: gi|38192157|gb|CF921363.1|CF921363
genomic: GAAAAACATCAAGCCAATCAAGTTATAGCGGGGGTGCATTTTACACTACAgtgagtttgt ... aagttttcagAATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAAT
EST: GAAAAACATCAAGCCAATCAAGTTATAGCGGGGGTGCATTTTACACTACA AATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAATEST: gi|254315478|gb|GR825287.1|GR825287
genomic: GAAAAACATCAAGCCAATCAAGTTATAGCGGGGGTGCATTTTACACTACAgtgagtttgt ... aagttttcagAATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAAT
EST: GAAAAACATCAAGCCAATCAAGTTATAGCGGGGGTGCATTTTACACTACA AATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAAT
genomic: GAAAAACATCAAGCCAATCAAGTTATAGCGGGGGTGCATTTTACACTACAgtgagtttgt ... aagttttcagAATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAAT
tcattcacaatttcttgcctacaccttatggatcctgatgttctaaagttttcagAATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAATCCTGAACCCGCTGATTATAACTATGGCTTTGGTGCGACAGTTGATATAC
ttctaaa putative branch site (score: 2)
ttttc CT-rich tract
taaagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaaaggaaaccatttacccatatctttcccagggtgaaaataaatcattcacaatttcttgcctacaccttatggatcctgatgttctaaagttttcagAATCCTGGAAGTGTTGCCCCTGCCACAAATTCAAGGCTATCTCCTCTTAATCCTGAACCCGCTGATTATAACTATGGCTTTGGTGCGACAGTTGATATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- aaaggaaa
- - - - - - - - acccata
- - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatg