Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcctgcttctgcagtctgcacacttagaattgtactaaaattttggggagaatgaatttgatctactaacaagaaatttgcatatgtatatgatgtttgtgatgtcatggtattcacaattttgtaaatcgatcttctgcagCCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGGACATGGCAGTTTGTTGTTGTCCGTCCAGTATGTTCCTTTCTGATGATTG

Basic information

species Glycine max
transcript GLYMA15G07390.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07390.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G025242_T02 (Zea mays), 3'ss of exon 3
gtatggcctgcttctgcagtctgcacacttagaattgtactaaaattttggggagaatgaatttgatctactaacaagaaatttgca-tatgtatatgatgtttgtgatgtcatggtattcacaattttgtaaatcgatcttctgcagCCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGGACATGGCAGTTTGTTGTTGTCCGTCCAGTATGTTCCTTTCTGATGATTG
                                               |      | |  | ||  || ||    ||     ||  || | ||  |   || | | || ||  | || | | | ||| || |   |     |   ||||||  | | ||| ||  || | ||| | |  ||||||||||| || |||||||| ||||| |||||| ||||  | |||||||||||| ||||||| ||||
-----------------------------------------------tcttcatgcacaatttgtatttaagttcacacgtttctcagtttggtttctatatctttgttgaaa-ggaactaataatcttatgcgttctgttatggcagCCCCGCAATGTCCGATTGGAGCACAAAACATTGAAGCTTCTGAAGTATTGGACCTGGCAATTTGTTATTGTTAGGCCAGTATGTTCCATTCTGATTATTG

upper sequence: GLYMA15G07390.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0404g00020.t01 (Vitis vinifera), 3'ss of exon 3
gtatggcctgcttctgcagtctgcacacttagaattgtactaaaattttggggagaatgaatttgatctactaacaagaaatttgcatatgtatatgatgtttgtgatgtcatggtattcacaattttgtaaatcgatcttctgcagCCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGGACATGGCAGTTTGTTGTTGTCCGTCCAGTATGTTCCTTTCTGATGATTG
                                      | | | || |     | ||   ||   || || ||| |  |  ||||    |       |||  |   |    ||     | |||   ||||   || |    ||||||||| | || || || ||| | |||||||   |||||||||| ||||||||||||||||||||||||||  ||||||| ||||| ||| || |||||||  
-------------------------------------gattcatatgtattccaaaacacat---attta-taagacaagctttgtgagttctcgatatggctagaagaatat----ctgaca--cttgtggttctaaaaactgcagCCTCGAACCGTCCGTCTGGATCACCATACACTGAAGCTTCTCAAATATTGGACATGGCAGTTTGTTGTCATCCGTCCTGTATGCTCCATTTTGATGATAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208259224|gb|GE055474.1|GE055474
EST:     AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAG                         CCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAGgtatggcctg ... tcttctgcagCCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|208248101|gb|GE044411.1|GE044411
EST:     AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAG                         CCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAGgtatggcctg ... tcttctgcagCCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|298164950|gb|HO010947.1|HO010947
EST:     AAATTAAAGGCAGGGAAATTCACCACCCTTTTCCAATGACACTCTTTCAG                         CCTTGTACTGTTCGCCTGAACCACCATAGTTTGAAGCTTCTAAAATATTGG
genomic: AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAGgtatggcctg ... tcttctgcagCCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
EST: gi|192298462|gb|FG989183.1|FG989183
EST:     AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAG                         CCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG
genomic: AAATTAAAGGCAGGGAAATTCACCACTCTTTTCCAATGACACTCTTTCAGgtatggcctg ... tcttctgcagCCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgatgtttgtgatgtcatggtattcacaattttgtaaatcgatcttctgcagCCTTGTACTGTTCGCCTGAACCACCATAATTTGAAGCTTCTAAAATATTGGACATGGCAGTTTGTTGTTGTCCGTCCAGTATGTTCCTTTCTGATGATTG
                                             tcttctgc  CT-rich tract
                            acaattttgtaaat  TA-rich tract