1 5' 3' | 2 5' 3' | 3 5' 3' |
gtactctcaacgtttctcattttctaaattgttttgtgaacattggtgagattcacattcacctttttttttttctttttgtcagGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGA
species | Glycine max |
transcript | GLYMA15G05800.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAG GTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCEST: gi|298163116|gb|HO011849.1|HO011849
genomic: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGgtactctcaa ... tttttgtcagGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTC
EST: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAG GTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCEST: gi|192315816|gb|FK008526.1|FK008526
genomic: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGgtactctcaa ... tttttgtcagGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTC
EST: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAG GTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCEST: gi|16277896|gb|BI942619.1|BI942619
genomic: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGgtactctcaa ... tttttgtcagGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTC
EST: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAG GTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCEST: gi|192315817|gb|FK008527.1|FK008527
genomic: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGgtactctcaa ... tttttgtcagGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTC
EST: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAG GTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCEST: gi|51344848|gb|CO985581.1|CO985581
genomic: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGgtactctcaa ... tttttgtcagGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTC
EST: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAG GTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCEST: gi|31310977|gb|CD396180.1|CD396180
genomic: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGgtactctcaa ... tttttgtcagGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTC
EST: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAG GTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTC
genomic: TTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCCCACAGgtactctcaa ... tttttgtcagGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTC
gttttgtgaacattggtgagattcacattcacctttttttttttctttttgtcagGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGA
ttcacattcacctttt CT-rich tract
tttttttttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctcaacgtttctcattttctaaattgttttgtgaacattggtgagattcacattcacctttttttttttctttttgtcagGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA