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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtctttctctctctctcactttacttcgatagataggcataggcttatgtgcaacttttgcagGTTCGTTGTTGGGAGGTAGCACGGAATGGAGTAAATGTTGCCACTGTTCCCAAGGCTTCTATAACGCACGATCATCCG

Basic information

species Glycine max
transcript GLYMA15G05740.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814762|gb|BQ299240.1|BQ299240
EST:     GCTTCAGTCCCAAAGCCAACTTCCTCGTCGCCACTTCTTGGGACAATCAG                         GTTCGTTGTTGGGAGGTAGCACGGAATGGAGTAAATGTTGCCACTGTTCCC
genomic: GCTTCAGTCCCAAAGCCAACTTCCTCGTCGCCACTTCTTGGGACAATCAGgtgcgtcttt ... acttttgcagGTTCGTTGTTGGGAGGTAGCACGGAATGGAGTAAATGTTGCCACTGTTCCC
EST: gi|4301254|gb|AI443164.1|AI443164
EST:     GCTTCAGTCCCAAAGCCAACTTCCTCGTCGCCACTTCTTGGGACAATCAG                         GTTCGTTGTTGGGAGGTAGCACGGAATGGAGTAAATGTTGCCACTGTTCCC
genomic: GCTTCAGTCCCAAAGCCAACTTCCTCGTCGCCACTTCTTGGGACAATCAGgtgcgtcttt ... acttttgcagGTTCGTTGTTGGGAGGTAGCACGGAATGGAGTAAATGTTGCCACTGTTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctctcactttacttcgatagataggcataggcttatgtgcaacttttgcagGTTCGTTGTTGGGAGGTAGCACGGAATGGAGTAAATGTTGCCACTGTTCCCAAGGCTTCTATAACGCACGATCATCCG
    ctctcac  putative branch site (score: 3)
 cttttgc  putative PPT
 tttactt  TA-rich tract