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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA

Basic information

species Glycine max
transcript GLYMA15G05670.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os07g33915.1 (Oryza sativa), 3'ss of exon 1
----------------gttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
                |  |   |  |   |  |    |         |   ||    |      |||||  || |   | | ||   ||  | |||     |||| |||||||||||||||||||| |||| | ||||||||||  | |||||||||  |||||| ||| | || |||    
gccccatcgcgccaccgcgcacggcattgttgctctcctccggccaggtccaaaagcagggtgcatttttcatgttatgatacatg-gttcctgtttt---cagGCAAAAACCACCAAGAAGATTGTGCTGAAGCTGCAATGCCAAAGCTGCAAGCATTACTCCCAGCACCCCATCAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os07g33860.1 (Oryza sativa), 3'ss of exon 2
-------------gttcgttggtta--aatatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
              |  | |  | |  |  |  | ||| |||  | ||| || ||       |   |||||        |  ||| ||  ||  |      |||| |||||||||||||||||||| |||| | ||||||||||  | |||||||||  |||||| ||| | || |||    
gttcaatgcaaacatgtggtaataaccatcacgtagttttaaa-gtatatgactttcagctgtgcatttttcat--gttatgatacatggttcctgttttcagGCAAAAACCACCAAGAAGATTGTGCTGAAGCTGCAATGCCAAAGCTGCAAGCATTACTCCCAGCACCCCATCAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os07g33898.1 (Oryza sativa), 3'ss of exon 2
-----------------------------------------------------------------------------------gttcgttggtt--aaatatttcgttataagtgcataggaattaggatcttttt--ttttttgctg------------acaaaaatatatttttatttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
                                                                                   ||  |||   |  ||| || | |  ||||       | | ||   || | | |   |||  ||||               |  ||| ||  ||  |      |||| |||||||||||||||||||| |||| | ||||||||||  | |||||||||  |||||| ||| | || |||    
gtattgtgacagtttatatgtgattacgcagtgctgtgtgtgattgtctctcttcattagaaacatatggtgtcatgatttgtgtctgttcaatgcaaacatgtggcaataaccatcatgtagttttaatgtatctgactttcagctgtgcatttttcatgttatgatacatggttcctgttttcagGCAAAAACCACCAAGAAGATTGTGCTGAAGCTGCAATGCCAAAGCTGCAAGCATTACTCCCAGCACCCCATCAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G103059_T01 (Zea mays), 3'ss of exon 2
-------------------------------------------gttcgttggttaaatatttcgttataagtgcataggaatta-ggatctttttt----------tttttgctgacaaaaatatatttttatttaaaat----agGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
                                            || | ||||   ||   |   || || |   |  |||||    ||   | ||          |||  | |   | |||| |  || |||| | |      |||| || |||||||||||||||||||||| | |||| |||||| | ||||||||   ||| || ||||| || |||    
gtaatgcaacatatctatttgattgtacttatacctttgtctgttttgatggtagcatgaatgtctagaaatatctgcgaattctaaatgcctgttgagagaataatttgggatatgacaaatgtgattgtattaatacctttcagGCCAAGACCACCAAGAAGATTGTTCTGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCCATCAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G125527_T02 (Zea mays), 3'ss of exon 2
-------------------------------------------gttcgttggttaaatatttcgttataagtgcataggaatta-ggatctttttttttttgctgac----------aaaaatatatttttatttaaaat----agGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
                                            || | || |   ||   |   |  || |   |  |||||    ||   | ||   |   | |           | ||||    || |||||| |      |||| || |||||||||||||||||||||| | |||| |||||| | ||||||||   ||| || ||||| || |||    
gtaatgcagcatatctatttgattgtacttatacctttgtctgttttgatgctagcatgaatgtctgaaaatatctgcgaattctaaatgcctgttcagtgattaatgtgggatatgacaaatgagattgtatttatacctttcagGCCAAGACCACCAAGAAGATTGTTCTGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCCATCAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
----------gttcgttggttaaatatttcgtta---taagtgcatagg-aattaggatctttttttttttgctgacaaaaatatatttttatttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
           | | | |  |   |   |  | |   ||| |    ||  ||||  |     || ||  | | |    |  || |   ||       || ||||||| |||||||||||||||||||||||| | || |||||||||||||| || || ||||| ||| | || |||    
ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagat--tgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0011g02090.t01 (Vitis vinifera), 3'ss of exon 2
----------------------------------------gttcgttggttaaatatttcgttataagtgcataggaattaggatcttttttttttt--------gctgacaaaaatatat--------------------ttttatttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
                                          ||  | |||  || |||| ||||||    | ||    |||||| |||    | |         ||| | ||    | ||                    ||||  | |||  |||| || || |||||||||||||| |||||| | ||||||||||||||||| ||||| || |||||| | || |||    
gtaaagaccctttctctggcattctcctcttccttgcaattatcaattgtttcatgtttc-ttataatgagagagcttgtaggatttttcaaatctgtagtagaagcttataagggcaaatccccatagcattgatccatctttttctcaaaccagGCCAAGACAACCAAGAAGATTGTGCTGAGGCTTCAATGCCAGGGTTGCAAACATGTATCGCAACACCCAATCAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------------------------------------gttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
                                                              | | ||  | | | ||| |  | ||  |   ||      |   | |  |    |||| |  |      |  |  | |  |||   |||| ||||||||||||||||| || |||||||||||||||||||| ||||| || || ||||| ||  | || |||    
gtaacaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgctttt-cacctaatcacctaat-cagGCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S22_326V6.2 (Physcomitrella patens), 3'ss of exon 3
gttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
                  || |  |   |||    || ||  | | |||| |||| | ||        | | ||||  ||||    ||||||| || |||||||||||||| |||||||| || ||||||| ||||||||| ||  | |||||  |||| |||    
------------------tcatcttctctgc----gatttttgttgttttcttttcttct--------tcttttttattttacctcaggctaagactaccaagaagattgtactgaggttacagtgccagGCTTGCAAGCACGTGACACAACATCCTATCAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 3
gttcgt-tggttaaatatttc-gttataagtgcataggaattagg-atctttttt----tttttgctgacaaaaatatat------ttttatttaaaat-agGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
  |||| | || ||  ||||| | ||  |    | |||| | ||  ||||| | |    |||||| ||       |   |      |||||||| |  | ||||||| || |||||||||||||| |||||||| || ||||||| ||||||||| ||  | |||||  |||| |||    
--tcgtattgtcaatgatttctggtagtaaaaaacaggactaagtcatcttctctgcgatttttgttgttttcttttcttcttcttttttattttacctcagGCTAAGACTACCAAGAAGATTGTACTGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 3
-------gttcgttggtt--aaatatttcgt---tataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaat-agGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
       |||    ||||  |||| |   |    | |   |  ||  | | || | | |  | | | ||  | ||  |  ||| || |  |  ||  | ||||||| || |||||||||||||| ||||||||||| || |||| ||||||||| ||  | |||||  | ||||||    
tcctggagtttcggggtttcaaatgtggggcaaatgttgttatatttggactatgctttcgtgtatctt-tttaccgatttatgttgtcttggaatctcagGCTAAGACTACCAAGAAGATTGTGCTGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S115_63V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------------------------------------------------gttcgt-tggttaaatatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
                                                                   || |   |||||||| ||             |||  |||       ||  |||||  ||      |  | | | || |       ||||||| ||||| ||||||||||| || ||||||||||||||||  |||||||| ||  | |||||  |||| |||    
gttagcttaactctgttgtatgtcttggatcaatatgttgtgactcctttcagtggctgcctaaatctcatgcagttaaatactttaactatttaatttagtgattgtatatgttgctttttgactatgctcaccagaatcttgtgcgtg-cagGCTAAGACCACGAAGAAGATTGTGCTTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S74_73V6.1 (Physcomitrella patens), 3'ss of exon 3
-------gttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgc--tgacaaaaatatatttt-tatttaaaat--agGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
         |      ||  | |   |  | |  |           | | |||  |      | ||  ||| |||    | |||  |||||       |||| || ||||| ||||||||||| || ||||||||||| |||| ||||||||||||  | |||||  | || |||    
gtgatttcataacaaatttgagaaccccctcttcgctttgtctcgctggtatcgatggcacgtggcactgagaaagtcctgtttgatattttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAGCATGTGACTCAACATCCCATCAAG----

upper sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S6_198V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------------------------------------------------------gttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttttttgctgacaaaaatatatttttat--------ttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
                                                                        || ||||  | |   |    |     ||  ||   |  |   || | | | || | ||      |  |||  |  | |        |||    ||||||| ||||| ||||||||||| || |||||||| ||||||| ||||||||||||  | || ||| |||| |||    
gttagctaaacccagtcgtgtatttcgaggttttatgtcactattctttagagtcatctggcttgtacgtgatttgttgaatcatgttcatatgtctcgtcaatctcatatctcatgtgtatattatggcgtttcgagctatgctcatgtgaaccgtattattgcagGCTAAGACCACAAAGAAGATTGTGCTCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13791555|gb|BG654146.1|BG654146
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|192303123|gb|FG994241.1|FG994241
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|31467235|gb|CD409263.1|CD409263
EST:     GCAAACAATCCGGTTATGGTGGACCAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|208118739|gb|GD919682.1|GD919682
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTG
EST: gi|18041170|gb|BM309455.1|BM309455
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|151412143|gb|EV281955.1|EV281955
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|163928775|gb|EH038599.1|EH038599
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|208062287|gb|GD857635.1|GD857635
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTG
EST: gi|6847594|gb|AW349803.1|AW349803
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|192298522|gb|FG989213.1|FG989213
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|58014790|gb|CX701532.1|CX701532
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|208106267|gb|GD903298.1|GD903298
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|5761219|gb|AI966582.1|AI966582
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCTTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|21602280|gb|BQ612602.1|BQ612602
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|15815644|gb|BI787919.1|BI787919
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|151398638|gb|EV268509.1|EV268509
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|298197799|gb|HO039338.1|HO039338
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|193521346|gb|FK478595.1|FK478595
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTT
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTT
EST: gi|31464065|gb|CD406093.1|CD406093
EST:     GCATACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|58024233|gb|CX710974.1|CX710974
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|4313639|gb|AI460758.1|AI460758
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|58015097|gb|CX701839.1|CX701839
EST:     GCAAACAATCCGGTTATGGTGGACAAATTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|192332711|gb|FK025368.1|FK025368
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCATGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|31311850|gb|CD397053.1|CD397053
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|31468057|gb|CD410085.1|CD410085
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|151409643|gb|EV279451.1|EV279451
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|18848936|gb|BM568046.1|BM568046
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|208172807|gb|GD972042.1|GD972042
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|7691471|gb|AW759598.1|AW759598
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|58014502|gb|CX701244.1|CX701244
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|6747108|gb|AW317564.1|AW317564
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|24135500|gb|BU926010.1|BU926010
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|16280944|gb|BI944229.1|BI944229
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|192303122|gb|FG994240.1|FG994240
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
EST: gi|208134996|gb|GD928771.1|GD928771
EST:     GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAG                         GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG
genomic: GCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggt ... tttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggaattaggatctttttttttttgctgacaaaaatatatttttatttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA
                       tgctgac  putative branch site (score: 2)
                                       tttttattt  putative PPT
             tttttttttttgctga  TA-rich tract