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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG

Basic information

species Glycine max
transcript GLYMA15G05570.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcat-tgttaaatatgatattgatatatatatttttctcgatgtttg-cagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                                               |   |   |  |||  ||  || |     |    | ||||    ||    || |   ||  |  || ||  ||||||  ||||| |||||||| ||||||||||| || |||||||| ||||| |||||| | ||||||||||| || || ||||| |||||||||||||| || |||||||
---------------------------------------------gtggttatcctgaacttagtcttttcagcaaagcggtatgttcctcatagc-ttaacggat-caccttcct-aatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 2
gttagaagatgttt-tgccaattgatgag--tgttt-cttgtgccattgaagaagactgttcactctgtgcttgctta-gtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
|||||   || ||  |||||     | |   ||||   | |  | ||||       | | |     | ||| |||| |   |||  | |      | || ||||||  || | ||  | | ||       |||| |||||||| ||||||||||| || ||||| || || || |||||| | || || |||||||| |||||||| |||||||| ||||| ||||||||||
gttagttaattttcctgccacgctgtaaaactgttagttcgcacaattgggatgttcagattctcttttgcctgctaatacatttgtagcacccaacga-attgat-catttcttcatgtgga-----atagGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCATGGTTGGTATGGGCCAGAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 3'ss of exon 2
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgttt-gcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                                           | | |||     |    |      |   | |      |   |  ||    || || |   || |   || ||  |  ||| ||||||||| ||||| || |||||||| || ||||| || || || |||||| ||||  | || ||||| |||||||| ||||| |||||||| ||||||||||
------------------------------------------gtcaggaacttcatcttttaaaccatctatcatctccaagactccaactgcatttttaccaatttgaattccttaaaattttgcagGCTGGGTTTGCTGGAGATGATGCACCAAGGGCTGTTTTTCCTAGCATTGTTGGTCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGGCAGAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                        |  |  |||||| | |  ||  |        | |    |||  | |  |    |    || | ||||| | ||| | ||   ||  ||||   ||||    |||||||||| || || |||||||| || |||||||||||||| || ||| ||||  | || ||||| || ||||| ||||| || ||||| ||||||||||
-----------------------gtctgattttctttttcttttttac----tcttacgtaatgtaat-gtatgtcgtctcctgctgaatattacatt-acat---tacatttcatcatgt----agGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 2
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                                               |    |      | |||   |||   |   || | |   |||||||  | | ||   ||| | | |||       |  ||||||||||||| || |||||||| || ||||| || ||||| |||||| ||||  | || ||||| |||||||| ||||| |||||||| |||||||| |
-----------------------------------------------gtcagcccccgtccctgactttgac-aacctttacttccaaatatgccactaat---tatgtctgtct-------tttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 2
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctg-tgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                                          ||         ||||||| ||| | | || | ||||  |||||||        | || || ||   |  |  |    |  | ||||||||||||||| ||||| ||||| || ||||| || ||||| |||||| ||||  | ||||| || ||||| || |||||||| ||||| ||||||||||
-----------------------------------------gtttgtagttcttgttcacgctgcttcatgttcagtaa-cattgttc-------tgttaatttaatcacatcacaaactactggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTTGGACGCCCACGTCACACTGGCGTGATGGTTGGCATGGGGCAGAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G067985_T06 (Zea mays), 3'ss of exon 2
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
              || |    ||  | ||   || |     |  | |    |      | |||   |||   |   || | |   |||||||  | | ||   ||| | | |||       |  ||||||||||||| || |||||||| || ||||| || ||||| |||||| ||||  | || ||||| |||||||| ||||| |||||||| |||||||| |
--------------tgtctgc-gacaa-tggcactggaatggtcaaggtcagcccccgtccctgactttgac-aacctttacttccaaatatgccactaat---tatgtctgtct-------tttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G067985_T08 (Zea mays), 3'ss of exon 1
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                                                 || |  ||  | |||  ||||   |   || |||   |||||||  | | ||   ||| | | ||        |  ||||||||||||| || || ||||| || ||||| || ||||| |||||| ||||  | || ||||| |||||||| ||||| |||||||| ||||||||||
----------------------------------------------gtcagccccttggccctg-acttgtacaacctttatttccaaatatgccactaat---tatgtctgtcc-------tttagGCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 2
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                                  ||||     |     |  ||| | |||   |  |     |   ||   || ||| |    || | | |  | | | || |    | || ||||||||||||||| ||||| ||||| || ||||| || ||||| |||||| | ||  | || || || |||||||| |||||||| ||||| ||||||||||
--------------------------------gtttgtagttcttgttcatgctggt-acttcatattctgcaacctttttctgctaatt----taatcacacgttt-tcttacaaactattggcagGCTGGTTTTGCTGGTGACGATGCGCCAAGGGCTGTTTTCCCAAGCATTGTCGGACGCCCCCGTCACACTGGTGTGATGGTTGGCATGGGGCAGAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 2
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
        |  | | |||| |||  |      || | | |   || |||   || ||      |    |  |||  ||| | | || | |  ||| || ||   ||| ||   | |     ||  ||||||| ||||| || |||||||||||  | || || ||||| || ||  ||||  | |||||||| |||||||| |||||||||||||| ||||||||||
------gtaattgtggccacttggcg------tcatattct-ctgcagattcctttttttcaggcagct-tttataatttaattttcagt-cgatgttcat---tattttccccccatctcttatagGCTGGCTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCAAGTATAGTTGGTCGTCCACGCCACACTGGTGTCATGGTTGGGATGGGACAGAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G126010_T03 (Zea mays), 3'ss of exon 1
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                               || || |  | || | |||| || |||   |   ||   ||   || ||  ||| |  ||    |||| |    |     | ||| || ||| ||||| ||||| || ||||||||||| || || || || |||||||||||| | || ||||||||||| || ||||| ||||| || ||||| || |||||||
------------------------------gttgttatctcgttca-gaagtcttttccaacaaagca-actc--tactc-ctgtgaccta----attgttgctcaa---ctcctcaatatttacagGCCGGTTTCGCTGGTGATGATGCGCCAAGAGCTGTCTTCCCCAGCATTGTGGGAAGACCACGCCACACCGGTGTCATGGTCGGCATGGGCCAAAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 3
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                        | ||     | |   || |       |||     |||   |  |||   |   || |||   || ||||  | | || ||| | |   | || |   ||  ||||||||||||| || || ||||| || ||||| || ||||| || ||| ||||  | || ||||| |||||||| ||||| |||||||| ||||||||||
-----------------------gtcagccccccctcccccct-------gacccccaacttgat--ttgtacaacctt-atttccaagtatgccactaat-tatgtgtacct-tctactcttctagGCTGGTTTTGCTGGCGACGATGCACCAAGGGCTGTTTTCCCTAGTATTGTTGGCCGTCCTCGCCACACTGGTGTTATGGTAGGGATGGGACAGAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 2
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgtt-aaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                                      | || ||       |   | | | ||| |   | |||| | |       |||||||  | | || | | | | | | ||     ||  ||||||||||||| || |||||||| || ||||| || ||||| |||||  ||||| | || || || || ||||| ||||| |||||||| ||||||||||
--------------------------------------gtcagtgctttt--ccccttaatttgtacagccatagtctcccccacccaaatatgccactaattt-tgtgtatctatc-----ttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G030169_T02 (Zea mays), 3'ss of exon 2
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattca-ttgttaaatatgatattgatat-atatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                           ||   | | ||  | | | |  | | | |  | |   | ||   ||   || ||  | ||| || |    |  || | |   | ||||  |     ||  ||||||| ||||| || ||||| |||||  | || || ||||| || ||  ||||  | ||||| || |||||||| |||||||||||||| ||||||||||
---------------------------gtaactgtagtcgcttggcatcatattctctaatgattcctctttttccatacagcttttagattttcagtcaatgttaagcactttttccatctcttatagGCTGGCTTTGCTGGAGATGACGCTCCACGTGCTGTTTTCCCAAGTATAGTTGGTCGTCCACGTCACACTGGTGTCATGGTTGGGATGGGACAGAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtt-tgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                  || ||||   |||||  |||| |     ||  || | | || || ||| ||   |        ||||||  | || | || | | ||  |   | ||| |   | |||||||||| ||||| |||||||||||||| ||||| ||||||||||| ||| ||||  |||| || || || ||||| |||||||||||||| || |||||||
--------------attaaactgattc-tgtttgctgtggcg----aggtgaatttgcattcagtgattatct--------ttgttagttttg-ttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ17401 (Selaginella moellendorffii), 3'ss of exon 1
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                                                               ||||   | | |      || ||      ||| |||||        | |  ||     ||||||||||| ||||| || || |||||||| ||||||||||| ||||||||| | ||  | ||    || || || || |||||||| ||||| ||||||||||
---------------------------------------------------------------gtgcgctcctggcgcggtttcttgtg---gattttgatccggggggtgtgttc-----ttgcagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

upper sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 1
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                                                               ||||   | | |      || ||      ||| |||||        | |  |     |||||||||||| ||||| || || |||||||| ||||||||||| ||||||||| | ||  | ||    || || || || |||||||| ||||| ||||||||||
---------------------------------------------------------------gtgcgctcctggcgcgatttcttgtg---gattttgatccggggggtgtgtt-----tttgcagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254346739|gb|GR856461.1|GR856461
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|7589136|gb|AW704916.1|AW704916
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|213587815|gb|DB959639.1|DB959639
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|209713368|gb|BW653865.1|BW653865
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|213587938|gb|DB971427.1|DB971427
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|213598434|gb|DB958102.1|DB958102
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|213587439|gb|DB967775.1|DB967775
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|213608166|gb|DB970805.1|DB970805
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|9987247|gb|BE661355.1|BE661355
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|298174952|gb|HO014869.1|HO014869
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|298189975|gb|HO031640.1|HO031640
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|7588704|gb|AW704494.1|AW704494
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|7283862|gb|AW596464.1|AW596464
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|5175444|gb|AI759777.1|AI759777
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|21601540|gb|BQ611871.1|BQ611871
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|213599641|gb|DB968375.1|DB968375
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|209713447|gb|BW681488.1|BW681488
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|6502270|gb|AW203643.1|AW203643
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|213620362|gb|DB961507.1|DB961507
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|24205144|gb|BU964397.1|BU964397
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|213617998|gb|DB963631.1|DB963631
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|7478706|gb|AW666373.1|AW666373
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|213595648|gb|DB968528.1|DB968528
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
EST: gi|209728385|gb|BW652042.1|BW652042
EST:     CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAG                         GCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT
genomic: CTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagat ... atgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG
                      tattgat  putative branch site (score: 3)
     ttcattgttaaatatg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG