1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttagtattccctctctctctctctttttagggttcactcccaattcaatgtattcatatatttattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAG
species | Glycine max |
transcript | GLYMA15G05410.5 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT GGAGACAGGAATGATTCTGAAGATCEST: gi|298196968|gb|HO041735.1|HO041735
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATC
EST: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCAEST: gi|193618093|gb|FK567065.1|FK567065
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCAEST: gi|207770399|gb|GD744141.1|GD744141
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: CTCTCCCCTCTAACGGTGTTCGCCAACGACCCTTTATTCGTCCTGTTACT GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCAEST: gi|7925292|gb|AW831318.1|AW831318
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCAEST: gi|193410651|gb|FK375868.1|FK375868
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: GTGCTCGCCAACGTTACCCTTTATTCGTCCTGTTACT GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCAEST: gi|208256506|gb|GE051819.1|GE051819
genomic: GTGCTCGCCAACG--ACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACCTTCAEST: gi|213590293|gb|DB963856.1|DB963856
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGGCTTTCAEST: gi|208167736|gb|GD963834.1|GD963834
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCAEST: gi|254317253|gb|GR826198.1|GR826198
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCAEST: gi|193531016|gb|FK487551.1|FK487551
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
tctctctttttagggttcactcccaattcaatgtattcatatatttattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAG
aattcaatgtattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtattccctctctctctctctttttagggttcactcccaattcaatgtattcatatatttattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA