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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtattccctctctctctctctttttagggttcactcccaattcaatgtattcatatatttattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAG

Basic information

species Glycine max
transcript GLYMA15G05410.4
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207740233|gb|GD717517.1|GD717517
EST:     CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT                         GGAGACAGGAATGATTCTGAAGATC
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATC
EST: gi|298196968|gb|HO041735.1|HO041735
EST:     CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT                         GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: gi|193618093|gb|FK567065.1|FK567065
EST:     CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT                         GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: gi|207770399|gb|GD744141.1|GD744141
EST:     CTCTCCCCTCTAACGGTGTTCGCCAACGACCCTTTATTCGTCCTGTTACT                         GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: gi|7925292|gb|AW831318.1|AW831318
EST:     CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT                         GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: gi|193410651|gb|FK375868.1|FK375868
EST:     GTGCTCGCCAACGTTACCCTTTATTCGTCCTGTTACT                         GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
genomic: GTGCTCGCCAACG--ACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: gi|208256506|gb|GE051819.1|GE051819
EST:     CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT                         GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACCTTCA
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: gi|213590293|gb|DB963856.1|DB963856
EST:     CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT                         GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGGCTTTCA
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: gi|208167736|gb|GD963834.1|GD963834
EST:     CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT                         GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: gi|254317253|gb|GR826198.1|GR826198
EST:     CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT                         GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
EST: gi|193531016|gb|FK487551.1|FK487551
EST:     CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACT                         GGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA
genomic: CTCTCCCCTCTAACGGTGCTCGCCAACGACCCTTTATTCGTCCTGTTACTgttagtattc ... tattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctctttttagggttcactcccaattcaatgtattcatatatttattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAG
                        aattcaatgtattcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtattccctctctctctctctttttagggttcactcccaattcaatgtattcatatatttattattcagGGAGACAGGAATGATTCTGAAGATCAACCTCCTGCTAAACGTCGACTTTCATCTGCTGTCGTTAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA