1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatctgcattgtgttgaagattatgctgtttaaaaagtagttagcttttgattattttgtatggagtgtgatgtgtgactagagcaagtgtttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAAGGCTGTTAAGTCAGGTGCTACTTTAAAGAAAAAGACCAAGAAGATCCG
species | Glycine max |
transcript | GLYMA15G04670.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|8404081|gb|BE059715.1|BE059715
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|213607965|gb|DB963023.1|DB963023
genomic: GAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|298178914|gb|HO024649.1|HO024649
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|6071966|gb|AW101353.1|AW101353
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|298179054|gb|HO024789.1|HO024789
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGTTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|10231523|gb|BE800411.1|BE800411
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GCAGGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|14126262|gb|BG790700.1|BG790700
genomic: GCAGGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: CACGCAGGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|213611697|gb|DB969085.1|DB969085
genomic: CACGCAGGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|209712413|gb|BW671265.1|BW671265
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|7685908|gb|AW756556.1|AW756556
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: ACGCAGGGTGTCCCGAATATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|12496334|gb|BG047012.1|BG047012
genomic: ACGCAGGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: AGGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|209723033|gb|BW668879.1|BW668879
genomic: AGGGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|213619677|gb|DB965623.1|DB965623
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|192313125|gb|FK004701.1|FK004701
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|192313126|gb|FK004702.1|FK004702
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|213593833|gb|DB957953.1|DB957953
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|20497965|gb|BQ272895.1|BQ272895
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: CGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|7686389|gb|AW757037.1|AW757037
genomic: CGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|298191234|gb|HO038713.1|HO038713
genomic: GAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATGGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAEST: gi|298166750|gb|HO010189.1|HO010189
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
EST: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAG CTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
genomic: GGTTTCCCGAAGATTTAACACCTATGGCTCCTAAAGgtattgtttt ... tttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTA
ttttgattattttgtatggagtgtgatgtgtgactagagcaagtgtttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAAGGCTGTTAAGTCAGGTGCTACTTTAAAGAAAAAGACCAAGAAGATCCG
gtttaat putative branch site (score: 4)
attattttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatctgcattgtgttgaagattatgctgtttaaaaagtagttagcttttgattattttgtatggagtgtgatgtgtgactagagcaagtgtttaatgcagCTGATAGTTTAAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAAGGCTGTTAAGTCAGGTGCTACTTTAAAGAAAAAGACCAAGAAGATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-atctgca
- - - - - -tgttgaa
- - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - -aaaaagta
- - - - - - - - - - - - - - - - - - - - - -gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaagtg