ERISdb: a Database of Plant Splice Sites

General
EST
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...tgttacggtttctttctctgctctttgaatgcttgctgcgtaatcttgcactgcctattaattctttaaatctacgctgctaattttactgcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGGTTGAGCGCTGTCAATAGGAGCCTCAGAGTTGCTAAGTCTGGTGTGAAGA

Basic information

species	Glycine max
transcript	GLYMA15G02610.1
intron #	2
splice site	3'
intron type	U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|14990941|gb|BI316614.1|BI316614

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|192311372|gb|FK003479.1|FK003479

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|24135770|gb|BU926289.1|BU926289

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|4296998|gb|AI442555.1|AI442555

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCANAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|192315381|gb|FK009645.1|FK009645

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|17153694|gb|BM143627.1|BM143627

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|23063685|gb|BU578599.1|BU578599

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|151407193|gb|EV277008.1|EV277008

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|193680608|gb|FK623674.1|FK623674

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|13481346|gb|BG510689.1|BG510689

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|16346895|gb|BI972490.1|BI972490

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|192297208|gb|FG990584.1|FG990584

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|10237378|gb|BE806266.1|BE806266

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|27426514|gb|CA938034.1|CA938034

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|151410743|gb|EV280558.1|EV280558

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|192311373|gb|FK003480.1|FK003480

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|192303731|gb|FG994569.1|FG994569

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|298181697|gb|HO025872.1|HO025872

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCGGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|5057915|gb|AI736391.1|AI736391

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|6566613|gb|AW234254.1|AW234254

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAA                         GTAGCANATAACTACTACAGGCCTGATCTCAAAAA
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAA

EST: gi|151396378|gb|EV266255.1|EV266255

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCGAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|6726821|gb|AW311240.1|AW311240

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|14008990|gb|BG725594.1|BG725594

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTACCAGATAACTACTACAAGGCC
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACA-GGCC

EST: gi|4303752|gb|AI443521.1|AI443521

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|16342149|gb|BI967744.1|BI967744

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|151399003|gb|EV268874.1|EV268874

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|192328989|gb|FK021400.1|FK021400

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|192315380|gb|FK009644.1|FK009644

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|298167325|gb|HO010764.1|HO010764

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|298198052|gb|HO039591.1|HO039591

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTATAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|298198105|gb|HO039644.1|HO039644

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|27808999|gb|CB063421.1|CB063421

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|23726993|gb|BU761510.1|BU761510

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|192318314|gb|FK007260.1|FK007260

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|298197088|gb|HO041831.1|HO041831

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|192333825|gb|FK025086.1|FK025086

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|23733835|gb|BU765129.1|BU765129

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|192318313|gb|FK007259.1|FK007259

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|298188643|gb|HO035336.1|HO035336

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|298196431|gb|HO041174.1|HO041174

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|8828018|gb|BE211748.1|BE211748

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|10234021|gb|BE802909.1|BE802909

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|298182705|gb|HO031440.1|HO031440

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|38193694|gb|CF922900.1|CF922900

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

EST: gi|16995990|gb|BM085362.1|BM085362

EST:     CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAG                         GTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG
genomic: CTGTCATGAAAAAGGAGTTCCGGAGGATGGCAAAGGCAGTGCAAAATCAGgtaactttga ... gcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGG

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

ttgcactgcctattaattctttaaatctacgctgctaattttactgcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGGTTGAGCGCTGTCAATAGGAGCCTCAGAGTTGCTAAGTCTGGTGTGAAGA

                                tgctaat  putative branch site (score: 2)
                                           ctgccttt  putative PPT
          tattaattctttaaat  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgttacggtttctttctctgctctttgaatgcttgctgcgtaatcttgcactgcctattaattctttaaatctacgctgctaattttactgcctttgcagGTAGCAGATAACTACTACAGGCCTGATCTCAAAAAGGCAGCTCTGGCAAGGTTGAGCGCTGTCAATAGGAGCCTCAGAGTTGCTAAGTCTGGTGTGAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - -ctctgct
- - - - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - -tgctgcg
- - - - - - - - - - - - - - - - - - - - - - - - cactgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgctgc

Data associated with selected splice site

Sequence

Basic information

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

Putative cis-regulatory sequences