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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgggaatctgctgcagatatttgctgacctcgatgatcattttctcaagGCTTCTGAGGCTGCTCATGAGGTTTCAAAGATGCTTGAGGCCACACGATTGCACTATCACTCCAATTTTGCGGATAATAGAG

Basic information

species Glycine max
transcript GLYMA15G01790.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01790.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv09s0002g04590.t01 (Vitis vinifera), 3'ss of exon 1
-----------------------------------------------------------------------------------------------------------------gttctgggaatctgctgcagatatttgctgacctcgatgatcattttctcaagGCTTCTGAGGCTGCTCATGAGGTTTCAAAGATGCTTGAGGCCACACGATTGCACTATCACTCCAATTTTGCGGATAATAGAG
                                                                                                                 |      |||| || | || ||||||  ||| || |||||||||||||| ||||| || |||  ||||||||||||||| |||||||                                                
acccccaccaccaggggcggtggtggggccgaagaatccaaaaaaggtgaaacaagggtcgagttcggtcactgcagggccaggagcaggggtcatggagGTGAAGAGAGCAGGAGGAAAGAATTTGTTACAAATATTTATTGAACTAGATGATCATTTTCTTAAGGCCTCAGAGAGTGCTCATGAGGTTTCCAAGATGC------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctgggaatctgctgcagatatttgctgacctcgatgatcattttctcaagGCTTCTGAGGCTGCTCATGAGGTTTCAAAGATGCTTGAGGCCACACGATTGCACTATCACTCCAATTTTGCGGATAATAGAG
                           tgctgac  putative branch site (score: 2)
                                          tcattttctc  putative PPT
                    agatattt  TA-rich tract