Sequence
atgc intronic sequence ATGC exonic sequence...tttctatttgaagctatatataatagttttattttgttattttttctattttaaatttatacaagtatatgtgttcatatagaaagtgggacttttgcagGATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGATCTGCAACCAAAAGGGTCTTTAAAGGGATTTATAGAA
Basic information
species | Glycine max |
transcript | GLYMA15G01560.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G01560.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G52830.1 (Arabidopsis thaliana), 3'ss of exon 2
----------------------tttctatttgaagctat---atataatagttttattttgtt--attttttctattttaaatttatacaagtatatgtgttcatatagaaagtgggacttttg-cagGATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGATCTGCAACCAAAAGGGTCTTTAAAGGGATTTATAGAA
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gtaagtttatgtttagcttgcattacaatgctcaattatcaaatttaccaaaatgaatataattaacctcttacaagtcaaaaatttgtaattttattttttaaattgtaaattttttttgtcggcagGATGTTTAAAGAATCATGCAAGAGGCTGAGGATCGTGAAGAGATCAGATGCAACTGGTTTTGGTCTCCAGCAAGATTAATCATACTAGCTAGTGTTGATC
upper sequence: GLYMA15G01560.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G15540.1 (Arabidopsis thaliana), 3'ss of exon 2
----tttctatttgaagctatatataatagttttattttgttattttttctattttaaatttatacaagtatatgtgttcatatagaaagtgggacttttgcagGATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGATCTGCAACCAAAAGGGTCTTTAAAGGGATTTATAGAA-
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gtatgttctatcttttg--acttaagatatctcactacaaaaagaaaatgtatcacaaacta----aagtaaatgagtt----tggatattttga--tttgcagGATGTTTCTAGAGTCATGCAAGAGGTTGAGAATAATGAAAAGATCGGATGCTACCGGGTTTGGGCTGCAGCCTAGAGGAGTAGACGAGTGATG-ATGACTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192322848|gb|FK014779.1|FK014779EST: TACGAGGACAAAGATGGTGACTGGATGCTCGTTGGAGATGTTCCTTGGGA GATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGC
genomic: TACGAGGACAAAGATGGTGACTGGATGCTCGTTGGAGATGTTCCTTGGGAgtaagtcctt ... acttttgcagGATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctattttaaatttatacaagtatatgtgttcatatagaaagtgggacttttgcagGATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGATCTGCAACCAAAAGGGTCTTTAAAGGGATTTATAGAA
cttttgc CT-rich tract
ttaaatttatacaagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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tttctatttgaagctatatataatagttttattttgttattttttctattttaaatttatacaagtatatgtgttcatatagaaagtgggacttttgcagGATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGATCTGCAACCAAAAGGGTCTTTAAAGGGATTTATAGAA
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