1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttctttttcacgcaattttcatacttttcttttatcatattttatgtactttttttataattgtgtattgtttgatgtagATTGAATATCCGGAGATTGAAGACCTCATGAAGCCGAGGCACCGGTTTATGTCCTCCTATGAACAG
species | Glycine max |
transcript | GLYMA15G00840.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGACCAAGCAGTATGACCCGGAGACAAAACAAAGATCTCTCCTATTCCAG ATTGAATATCCGGAGATTGAAGACCTCATGAAGCCGAGGCACCGGTTTATGEST: gi|298167794|gb|HO013057.1|HO013057
genomic: TGACCAAGCAGTATGACCCGGAGACAAAACAAAGATCTCTCCTATTCCAGgttctttttc ... tttgatgtagATTGAATATCCGGAGATTGAAGACCTCATGAAGCCGAGGCACCGGTTTATG
EST: TGACCAAGCAGTATGACCCGGAGACAAAACAAAGATCTCTCCTATTCCAG ATTGAATATCCGGAGATTGAAGACCTCATGAAGCCGAGGCACCGGTTTATGEST: gi|209700591|gb|BW670322.1|BW670322
genomic: TGACCAAGCAGTATGACCCGGAGACAAAACAAAGATCTCTCCTATTCCAGgttctttttc ... tttgatgtagATTGAATATCCGGAGATTGAAGACCTCATGAAGCCGAGGCACCGGTTTATG
EST: TGACCAAGCAGTATGACCCGGAGACAAAACAAAGATCTCTCCTATTCCAG ATTGAATATCCGGAGATTGAAGACCTCATGAAGCCGAGGCACCGGTTTATG
genomic: TGACCAAGCAGTATGACCCGGAGACAAAACAAAGATCTCTCCTATTCCAGgttctttttc ... tttgatgtagATTGAATATCCGGAGATTGAAGACCTCATGAAGCCGAGGCACCGGTTTATG
tttcttttatcatattttatgtactttttttataattgtgtattgtttgatgtagATTGAATATCCGGAGATTGAAGACCTCATGAAGCCGAGGCACCGGTTTATGTCCTCCTATGAACAG
gtttgat putative branch site (score: 5)
tttatcatattttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctttttcacgcaattttcatacttttcttttatcatattttatgtactttttttataattgtgtattgtttgatgtagATTGAATATCCGGAGATTGAAGACCTCATGAAGCCGAGGCACCGGTTTATGTCCTCCTATGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC