Sequence
atgc intronic sequence ATGC exonic sequencegtatgtacatcttcacaataattctctggctaccctttgctaagtaatcttcttttttatttctgtatcctctcttatacaacttgcagATTCCAATACAACTTGGCTGCAAAAAAAATCCATTGTCTTATGACATTACAGCTGCATGTAGTGGATTTCTGCTGGGTTTAATATCATCTTCTTGTCACA
Basic information
species | Glycine max |
transcript | GLYMA15G00550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G00550.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G62640.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgtacatcttcacaat-aattctctggctaccctttgcta-agtaatcttcttttttatttc-tgtatcctctct-tatacaacttgcagATTCCAATACAACTTGGCTGCAAAAAAAATCCATTGTCTTATGACATTACAGCTGCATGTAGTGGATTTCTGCTGGGTTTAATATCATCTTCTTGTCACA
||| | || || | |||||| | | ||| | | ||||| || || ||| | | || | || | |||||||| || |||||| |||| ||| || |||||| ||||||| || |||||||| |||||||||||| | ||||| || | ||| || ||||||| |
----gtatttattgacccttaattctaaaatttctcttcggtggagtaagatttcccgttgtttgattcgcgataactgtctattgatggcagATTCAAAAGGCACTTGGTTGCACAAAGAACCCATTGGCTTATGATATCACAGCTGCTTGTAGTGGATTTGTTTTGGGTCTAGTTTCAGCTGCTTGTCATA
upper sequence: GLYMA15G00550.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0154g00140.t01 (Vitis vinifera), 3'ss of exon 3
-----gtatgtacatcttcacaataattctctggctaccctttgctaagtaatc---ttcttttttatttctgtatcctc---tcttatacaacttg-cagATTCCAATACAACTTGGCTGCAAAAAAAATCCATTGTCTTATGACATTACAGCTGCATGTAGTGGATTTCTGCTGGGTTTAATATCATCTTCTTGTCACA
| | ||| | | || || | | | |||| | || | | ||||||| | | || | || | | | ||||| | || | ||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||| || ||||| || | ||| || ||||||| |
tcaaaactctaatgttttccacttcagcttccatct-tcttattctaaccattcgagtgcctttttatgctcatgttcttatgttttgtttcatatatcagATCCAAAAAGCACTTGGCTGCAAAAAAAATCCTTTGGCTTATGATATTACAGCTGCATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttgctaagtaatcttcttttttatttctgtatcctctcttatacaacttgcagATTCCAATACAACTTGGCTGCAAAAAAAATCCATTGTCTTATGACATTACAGCTGCATGTAGTGGATTTCTGCTGGGTTTAATATCATCTTCTTGTCACA
taagtaatcttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtacatcttcacaataattctctggctaccctttgctaagtaatcttcttttttatttctgtatcctctcttatacaacttgcagATTCCAATACAACTTGGCTGCAAAAAAAATCCATTGTCTTATGACATTACAGCTGCATGTAGTGGATTTCTGCTGGGTTTAATATCATCTTCTTGTCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA