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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttttacaccatctcccatttactctctgttactactaacaccccccccccccccccattcccttttctttctttcatccagGCAGCTTGCCTTCTACACAGGACCCACAG

Basic information

species Glycine max
transcript GLYMA15G00380.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213610489|gb|DB958794.1|DB958794
EST:     ACCTTATTGGGGATTACTCCTTCGGCAGAACGTCTCGGTTATGCTACCGA                         GCAGCTTGCCTTCTACACAGGACCCACAG
genomic: ACCTTATTGGGGATTACTCCTTCGGCAGAACGTCTCGGTTATGCTACCGAgtaagtcttt ... tttcatccagGCAGCTTGCCTTCTACACAGGACCCACAG
EST: gi|213614610|gb|DB972850.1|DB972850
EST:     ACCTTATTGGGGATTACTCCTTCGGCAGAACGTCTCGGTTATGCTACCGA                         GCAGCTTGCCTTCTACACAGGACCCACAG
genomic: ACCTTATTGGGGATTACTCCTTCGGCAGAACGTCTCGGTTATGCTACCGAgtaagtcttt ... tttcatccagGCAGCTTGCCTTCTACACAGGACCCACAG
EST: gi|209711678|gb|BW674041.1|BW674041
EST:     ACCTTATTGGGGATTACTCCTTCGGCAGAACGTCTCGGTTATGCTACCGA                         GCAGCTTGCCTTCTACACAGGACCCACAG
genomic: ACCTTATTGGGGATTACTCCTTCGGCAGAACGTCTCGGTTATGCTACCGAgtaagtcttt ... tttcatccagGCAGCTTGCCTTCTACACAGGACCCACAG
EST: gi|209715667|gb|BW674353.1|BW674353
EST:     ACCTTATTGGGGATTACTCCTTCGGCAGAACGTCTCGGTTATGCTACCGA                         GCAGCTTGCCTTCTACACAGGACCCACAG
genomic: ACCTTATTGGGGATTACTCCTTCGGCAGAACGTCTCGGTTATGCTACCGAgtaagtcttt ... tttcatccagGCAGCTTGCCTTCTACACAGGACCCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttactactaacaccccccccccccccccattcccttttctttctttcatccagGCAGCTTGCCTTCTACACAGGACCCACAG
      tactaac  putative branch site (score: 0)
              cccccccccccccccc  CT-rich tract
                                    ttttcttt  TA-rich tract